Hg_chrom9_TN10mRNA_16674
Organism: Heterodera glycines Gene Locus: chr9:612885-617239 Feature type: polypeptideProtein Sequence
Length: 548
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.764 | 1.74 | 0.896 | 0.629 | 1.004 | 1.45 | 0.63 | 1.369 | 0.973 | 1.455 | 0.885 | 1.503 | 0.912 | 0.632 | 1.303 | 1.721 | 0.748 | 0.636 | 0.842 | 0.322 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_15763
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|lysosome_vacuole
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.215
|
0.251
|
0.009
|
0.630
|
0.212
|
0.656
|
0.427
|
0.044
|
0.214
|
0.033
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012469
|
1.000
|
1.000
|
Hsc_gene_21366.t1
|
Hsc_gene_21366.t1
|
— |
O76902.1 Pleckstrin homology domain-containing family F member 1 homolog [Drosophila melanogaster]
|
KAI1726598.1 FYVE zinc finger domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0046872
|
GO:0005575_0.846|GO:0110165_0.831|GO:0005622_0.808|GO:0008150_0.706|GO:0005737_0.685|GO:0016020_0.680|GO:0043226_0.680|GO:0003674_0.671|GO:0043229_0.670|GO:0009987_0.668|GO:0043227_0.635|GO:0043231_0.612|GO:0005488_0.537|GO:0071944_0.513|GO:0005886_0.503
|
IPR000306+59-116_65-104+|IPR011011+65-106+|IPR013083+61-117+|IPR017455+66-100+|IPR021565+499-538+|IPR036531+487-538+|IPR052727+62-538+
|
SM00064+59-116+
|
PF01363+65-104+FYVE_zinc_finger|PF11464+499-538+Rabenosyn_Rab_binding_domain
|
— |
PTHR13510+62-538+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
299-504
|
2.000
|
1-298;505-548
|
3t7l_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.902
|
61183.890
|
8.633
|
14.500
|
25.912
|
8.212
|
55.657
|
44.343
|
14.964
|
10.949
|
50.182
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
turquoise
|
892.571
|
1890.537
|
1062.142
|
678.928
|
695.611
|
600.454
|
1303.849
|
853.095
|
337.121
|
995.425
|
713.295
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.062
|
-1.615
|
-0.536
|
— | — |
1.130
|
0.402
|
0.755
|
— | — | — | — | — |
No JSON data available for plots.