Hg_chrom9_TN10mRNA_16675
Organism: Heterodera glycines Gene Locus: chr9:617871-620313 Feature type: polypeptideProtein Sequence
Length: 510
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.049 | 0.912 | 1.39 | 0.203 | 2.124 | 2.011 | 0.42 | 0.686 | 0.479 | 0.689 | 2.08 | 1.038 | 1.035 | 1.282 | 0.48 | 0.728 | 0.996 | 0.891 | 0.151 | 0.173 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_15764
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.885
|
0.090
|
0.012
|
0.319
|
0.028
|
0.013
|
0.016
|
0.000
|
0.031
|
0.199
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012470
|
1.000
|
1.000
|
Hsc_gene_21365.t1
|
— | — | — |
KAI1726597.1 nucleolin [Ditylenchus destructor]
|
No
|
-0.120
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003676
|
GO:0005575_0.952|GO:0110165_0.951|GO:0008150_0.937|GO:0005622_0.925|GO:0009987_0.894|GO:0043226_0.893|GO:0016020_0.882|GO:0043229_0.869|GO:0065007_0.852|GO:0003674_0.841|GO:0005488_0.841|GO:0050789_0.833|GO:0050794_0.817|GO:0005515_0.814|GO:0005737_0.814|GO:0043227_0.814|GO:0043231_0.778|GO:0043228_0.776|GO:0043232_0.776|GO:0008152_0.772|GO:0043170_0.772|GO:0032502_0.771|GO:0048856_0.771|GO:0009058_0.762|GO:0009059_0.762|GO:0010467_0.762|GO:0044237_0.762|GO:0044249_0.762|GO:0032501_0.760|GO:0006139_0.758|GO:0019222_0.758|GO:0044238_0.758|GO:0048518_0.751|GO:0031323_0.745|GO:0032991_0.745|GO:0060255_0.745|GO:0090304_0.745|GO:0005634_0.742|GO:0048519_0.741|GO:0048522_0.741|GO:0034654_0.739|GO:0141187_0.738|GO:0080090_0.737|GO:0016070_0.736|GO:0007275_0.735|GO:0048523_0.733|GO:0071944_0.733|GO:0009889_0.730|GO:0031326_0.730|GO:0032774_0.729|GO:0010556_0.728|GO:0097159_0.727|GO:0048731_0.725|GO:0019538_0.723|GO:0009893_0.720|GO:0010468_0.720|GO:0005886_0.719|GO:0003676_0.717|GO:0010604_0.711|GO:0031325_0.710|GO:0003723_0.709|GO:0019219_0.709|GO:0019899_0.708|GO:0009891_0.705|GO:0031328_0.705|GO:0051252_0.703|GO:0009892_0.702|GO:0006351_0.701|GO:0010557_0.701|GO:0010605_0.700|GO:0031324_0.699|GO:2001141_0.698|GO:0006355_0.696|GO:0009890_0.694|GO:0010558_0.694|GO:0031327_0.694|GO:0045935_0.693|GO:0009653_0.692|GO:0051246_0.691|GO:0051254_0.689|GO:1902680_0.687|GO:0006412_0.686|GO:0006414_0.686|GO:0045893_0.685|GO:0010629_0.684|GO:0010608_0.681|GO:0016072_0.679|GO:0048646_0.679|GO:0051248_0.677|GO:0006417_0.676|GO:0035295_0.676|GO:0006360_0.675|GO:0072359_0.675|GO:0035239_0.674|GO:0042802_0.674|GO:0001525_0.670|GO:0001568_0.670|GO:0001944_0.670|GO:0006356_0.670|GO:0009303_0.670|GO:0017148_0.670|GO:0042790_0.670|GO:0045943_0.670|GO:0048514_0.670|GO:1901836_0.670|GO:1901838_0.670|GO:0003677_0.669|GO:0043565_0.664|GO:0003729_0.657|GO:0031974_0.652|GO:0031981_0.652|GO:0043233_0.652|GO:0070013_0.652|GO:0042162_0.650|GO:0044547_0.650|GO:0048027_0.650|GO:0099080_0.646|GO:0005654_0.604|GO:0005773_0.602|GO:0012505_0.595|GO:0005730_0.583|GO:0031982_0.580|GO:0005694_0.574|GO:0031090_0.574|GO:0005576_0.569|GO:0043230_0.568|GO:0005615_0.566|GO:0065010_0.566|GO:0070062_0.566|GO:1903561_0.566|GO:1990904_0.565|GO:0031410_0.560|GO:0097708_0.560|GO:0098588_0.559|GO:0035770_0.556|GO:0036464_0.556|GO:0005768_0.547|GO:0005938_0.547|GO:0012506_0.546|GO:0030659_0.546|GO:0010008_0.540|GO:0044352_0.540|GO:0044354_0.540|GO:0160056_0.540
|
IPR012677+412-510+|IPR035979+369-508+
|
— | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-350
|
1.000
|
351-510
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.711
|
57232.650
|
4.803
|
-18.500
|
37.843
|
5.882
|
60.784
|
39.216
|
17.451
|
20.392
|
48.431
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
8021.226
|
8348.881
|
4637.239
|
13059.137
|
12730.495
|
7764.260
|
5963.929
|
3857.657
|
10866.504
|
5807.388
|
7975.581
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.077
|
0.508
|
1.602
|
— |
-0.698
|
-0.369
|
-1.114
|
0.772
|
— | — | — | — | — |
No JSON data available for plots.