Hg_chrom9_TN10mRNA_16677
Organism: Heterodera glycines Gene Locus: chr9:638679-646054 Feature type: polypeptideProtein Sequence
Length: 571
(Signal peptide: 1-25)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.14 | 1.14 | 1.242 | 0.664 | 0.788 | 0.674 | 0.834 | 1.138 | 0.817 | 1.183 | 0.955 | 0.927 | 1.703 | 0.808 | 0.929 | 0.901 | 0.89 | 1.008 | 2.155 | 1.03 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_15766
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-J3_J4_Female_Male
|
0.993
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
nucleus
|
KRRK
|
— | — | — | — |
1-25
|
0.994
|
1.000
|
0.000
|
0.000
|
0.173
|
0.200
|
0.028
|
0.357
|
0.254
|
0.455
|
0.286
|
0.018
|
0.312
|
0.885
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012471
|
1.000
|
1.000
|
Hsc_gene_21362.t1
|
Hsc_gene_21362.t1
|
— |
G5ECR8.1 Putative glucosylceramidase 3 [Caenorhabditis elegans]
|
KAI1716646.1 glycosyl hydrolase family 30 TIM-barrel domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004348|GO:0006665
|
GO:0008150_0.944|GO:0005575_0.877|GO:0110165_0.877|GO:0003674_0.871|GO:0003824_0.794|GO:0008152_0.783|GO:0009987_0.760|GO:0044238_0.756|GO:0043170_0.723|GO:0016787_0.709|GO:0016020_0.697|GO:0050896_0.678|GO:0016798_0.664|GO:0065007_0.664|GO:0005622_0.662|GO:0005737_0.662|GO:0005488_0.652|GO:0044237_0.652|GO:0050789_0.647|GO:0009058_0.641|GO:0051716_0.638|GO:0032501_0.633|GO:0050794_0.630|GO:0051179_0.630|GO:0044281_0.628|GO:0006810_0.627|GO:0051234_0.627|GO:0005515_0.626|GO:0006950_0.622|GO:0005576_0.621|GO:0071840_0.621|GO:0019538_0.620|GO:1901135_0.618|GO:0016043_0.616|GO:0009056_0.606|GO:0043226_0.606|GO:0007154_0.603|GO:0023052_0.602|GO:0048518_0.602|GO:0048519_0.602|GO:0007165_0.596|GO:0016740_0.596|GO:0048523_0.596|GO:0065008_0.596|GO:0043229_0.594|GO:0055085_0.594|GO:0006629_0.593|GO:0019222_0.593|GO:0010646_0.590|GO:0048583_0.590|GO:0008610_0.589|GO:0023051_0.589|GO:0060255_0.589|GO:1901615_0.589|GO:0044085_0.587|GO:0044255_0.587|GO:0080090_0.587|GO:0009057_0.586|GO:0009966_0.586|GO:0043227_0.586|GO:0044248_0.586|GO:0006996_0.584|GO:0009893_0.584|GO:0003008_0.582|GO:0006066_0.582|GO:0006811_0.582|GO:0009892_0.582|GO:0010604_0.582|GO:0022607_0.582|GO:0034220_0.582|GO:0043231_0.582|GO:0051128_0.582|GO:0051246_0.582|GO:0035556_0.580|GO:0070085_0.580|GO:1902531_0.580|GO:0010605_0.579|GO:0016042_0.579|GO:0043933_0.579|GO:0009894_0.578|GO:0030163_0.578|GO:0065003_0.578|GO:0043603_0.577|GO:0044242_0.577|GO:0050877_0.577|GO:0008202_0.576|GO:0051248_0.576|GO:0006643_0.573|GO:0006664_0.573|GO:0006665_0.573|GO:0006672_0.573|GO:0006677_0.573|GO:0006678_0.573|GO:0006680_0.573|GO:0006687_0.573|GO:0006914_0.573|GO:0007033_0.573|GO:0007040_0.573|GO:0008203_0.573|GO:0016125_0.573|GO:0016236_0.573|GO:0019377_0.573|GO:0030149_0.573|GO:0030258_0.573|GO:0030259_0.573|GO:0031333_0.573|GO:0031929_0.573|GO:0032006_0.573|GO:0042176_0.573|GO:0042391_0.573|GO:0043254_0.573|GO:0044087_0.573|GO:0046466_0.573|GO:0046477_0.573|GO:0046479_0.573|GO:0046514_0.573|GO:0051129_0.573|GO:0051247_0.573|GO:0061919_0.573|GO:0080171_0.573|GO:1901136_0.573|GO:1902652_0.573|GO:1903509_0.573|GO:0004553_0.569|GO:0016757_0.568|GO:0016758_0.567|GO:0005102_0.565|GO:0005773_0.560|GO:0004348_0.556|GO:0008422_0.556|GO:0015926_0.556|GO:0017042_0.556|GO:0046527_0.556|GO:0031090_0.504
|
IPR001139+19-558_38-57_134-160_162-190_235-252_309-331+|IPR013780+481-561+|IPR017853+108-460+|IPR033452+500-554+|IPR033453+109-457+
|
— |
PF02055+109-457+Glycosyl_hydrolase_family_30_TIM-barrel_domain|PF17189+500-554+Glycosyl_hydrolase_family_30_beta_sandwich_domain
|
G3DSA:3.20.20.80:FF:000030+88-461+Lysosomal_acid_glucosylceramidase
|
PTHR11069+19-558+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
559-571
|
1.000
|
1-558
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.657
|
63940.520
|
6.806
|
2.500
|
24.694
|
14.711
|
43.958
|
56.042
|
13.135
|
11.559
|
53.065
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
1676.012
|
130.429
|
624.852
|
1277.999
|
2249.431
|
5009.244
|
2327.905
|
2628.845
|
785.812
|
1399.928
|
1136.736
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.031
|
3.155
|
1.141
|
0.784
|
1.170
|
-1.096
|
-1.039
|
— | — | — | — | — | — |