SCN Proteipedia

Hg_chrom9_TN10mRNA_16678

Organism: Heterodera glycines Gene Locus: chr9:649962-661789 Feature type: polypeptide

Protein Sequence

Length: 1,065

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.059	1.419	0.905	0.615	1.049	1.42	0.715	1.315	1.106	0.901	0.854	1.049	0.469	1.535	0.881	1.315	1.201	0.811	0.578	0.552	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom9_TN10gene_15767	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	19-Not_Clustered	0.946

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm	—	KKELLLNEIKIMQRYKHK	14-34	0.997	—	—	—	—	0.000	—	—	0.241	0.209	0.019	0.731	0.181	0.289	0.239	0.030	0.543	0.068

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0012472	1.000	1.000	Hsc_gene_21361.t1	Hsc_gene_21361.t1	—	G5EGQ3.1 Serine/threonine-protein kinase max-2 [Caenorhabditis elegans]	KAH7721881.1 CRE-MAX-2 protein [Aphelenchus avenae]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004672\|GO:0004674\|GO:0005524\|GO:0006468	GO:0008150_0.983\|GO:0009987_0.927\|GO:0005575_0.896\|GO:0110165_0.885\|GO:0065007_0.837\|GO:0050789_0.832\|GO:0050794_0.822\|GO:0003674_0.820\|GO:0003824_0.797\|GO:0140096_0.797\|GO:0005622_0.796\|GO:0016043_0.793\|GO:0071840_0.793\|GO:0016740_0.752\|GO:0050896_0.750\|GO:0016772_0.736\|GO:0016773_0.736\|GO:0004672_0.735\|GO:0016301_0.735\|GO:0032502_0.649\|GO:0048856_0.649\|GO:0051716_0.644\|GO:0048518_0.622\|GO:0016020_0.610\|GO:0032501_0.606\|GO:0005737_0.580\|GO:0043226_0.577\|GO:0007275_0.552\|GO:0004674_0.548\|GO:0007154_0.548\|GO:0023052_0.542\|GO:0071944_0.538\|GO:0048522_0.537\|GO:0005488_0.528\|GO:0007165_0.526\|GO:0048731_0.507\|GO:0048869_0.501	IPR000095+62-117_63-76_63-96+\|IPR000719+770-1042+\|IPR008271+907-919+\|IPR011009+766-1055+\|IPR017441+776-799+\|IPR033923+62-104+\|IPR036936+59-135+\|IPR050285+742-1060+	SM00220+770-1042+\|SM00285+63-96+	PF00069+770-1042+Protein_kinase_domain\|PF00786+62-117+P21-Rho-binding_domain	G3DSA:1.10.510.10:FF:000768+869-1059+Non-specific_serine/threonine_protein_kinase	PTHR48015+742-1060+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-74;130-760	2.000	75-129;761-1065	9lbg_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.825	115217.700	6.506	0.000	23.850	6.948	52.019	47.981	12.582	11.268	57.840

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	blue	3088.331	3221.594	1457.366	1396.667	2301.301	2233.516	2320.163	2250.662	659.936	7323.522	4467.699

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.373	-1.343	—	0.689	—	—	—	—	-1.669	—	—	—	—

No JSON data available for plots.

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