SCN Proteipedia

Hg_chrom9_TN10mRNA_16679

Organism: Heterodera glycines Gene Locus: chr9:665374-674439 Feature type: polypeptide

Protein Sequence

Length: 838

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.013	1.193	0.846	0.741	0.994	2.784	0.526	2.506	0.796	1.258	0.85	1.404	0.431	1.102	1.12	0.835	0.861	0.922	0.367	0.526	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom9_TN10gene_15768	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	25-Not_Clustered	0.953

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	—	—	—	—	—	—	—	0.000	—	—	0.888	0.084	0.006	0.308	0.053	0.057	0.051	0.006	0.070	0.021

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0012473	1.000	1.000	Hsc_gene_21358.t1	Hsc_gene_21358.t1	—	Q61SK8.2 MOG interacting and ectopic P-granules protein 1 [Caenorhabditis briggsae]	KAF7637579.1 Mep-1 [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0005575_0.911\|GO:0008150_0.911\|GO:0110165_0.904\|GO:0065007_0.885\|GO:0050789_0.877\|GO:0009987_0.873\|GO:0050794_0.872\|GO:0005622_0.860\|GO:0043226_0.803\|GO:0008152_0.802\|GO:0043170_0.802\|GO:0016020_0.801\|GO:0048518_0.799\|GO:0019222_0.796\|GO:0031323_0.796\|GO:0044237_0.796\|GO:0048522_0.792\|GO:0003674_0.791\|GO:0005488_0.789\|GO:0060255_0.789\|GO:0043229_0.787\|GO:0009058_0.772\|GO:0009059_0.772\|GO:0044249_0.772\|GO:0009889_0.769\|GO:0031326_0.769\|GO:0010556_0.767\|GO:0032502_0.765\|GO:0048856_0.765\|GO:0010467_0.764\|GO:0010468_0.763\|GO:0032501_0.755\|GO:0009893_0.753\|GO:0010604_0.749\|GO:0043227_0.748\|GO:0031325_0.738\|GO:0005634_0.735\|GO:0043231_0.735\|GO:0009891_0.730\|GO:0007275_0.729\|GO:0005515_0.725\|GO:0031328_0.725\|GO:0048731_0.723\|GO:0010557_0.717\|GO:0030154_0.716\|GO:0048869_0.716\|GO:0048513_0.694\|GO:0048468_0.687\|GO:0097159_0.683\|GO:0003676_0.659\|GO:0019899_0.616\|GO:0010628_0.598\|GO:0003006_0.597\|GO:0022414_0.597\|GO:0048609_0.588\|GO:0061458_0.587\|GO:0019953_0.586\|GO:0048608_0.586\|GO:0007276_0.584\|GO:0009791_0.582\|GO:0022412_0.579\|GO:0007548_0.577\|GO:0007281_0.576\|GO:0007292_0.574\|GO:0048477_0.574\|GO:0042802_0.573\|GO:0045137_0.573\|GO:0008406_0.572\|GO:0003723_0.571\|GO:0002164_0.569\|GO:0002119_0.564\|GO:0009994_0.564\|GO:0040025_0.560\|GO:0048599_0.560\|GO:0017151_0.543\|GO:0042826_0.543	IPR013087+360-383_389-412_426-453_428-446_680-704_721-744_723-744_762-783_794-817_796-817+	SM00355+360-383_389-412_426-453_680-704_721-744_762-783_794-817+	PF12874+428-446+Zinc-finger_of_C2H2_type	—	PTHR14312+649-837+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-194;474-674;815-838	2.000	195-473;675-814	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.690	94037.180	8.002	25.000	26.730	8.831	53.819	46.181	16.110	10.621	47.971

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	blue	3480.070	2054.144	2584.830	1921.871	1936.388	2097.991	2260.074	2001.406	2678.178	7645.411	5516.597

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.102	-0.233	-0.319	—	0.131	—	—	0.318	—	—	—	—	—

No JSON data available for plots.

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