Hg_chrom9_TN10mRNA_16681
Organism: Heterodera glycines Gene Locus: chr9:684775-690800 Feature type: polypeptideProtein Sequence
Length: 702
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.093 | 1.06 | 1.399 | 0.54 | 0.902 | 2.301 | 0.814 | 1.282 | 0.855 | 0.943 | 0.281 | 1.592 | 0.791 | 1.041 | 1.163 | 1.262 | 1.168 | 0.863 | 0.11 | 0.545 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_15770
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Not_Clustered
|
0.565
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
RRRR
|
51-91
|
0.993
|
1-92
|
0.971
|
— | — |
0.000
|
— | — |
0.768
|
0.161
|
0.059
|
0.593
|
0.039
|
0.064
|
0.080
|
0.029
|
0.115
|
0.051
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002047
|
3.000
|
1.000
|
Hsc_gene_21355.t1
|
Hsc_gene_21356.t1
|
— |
Q5XIK8.1 CTD small phosphatase-like protein 2 [Rattus norvegicus]
|
KAI3413353.1 CTD small phosphatase-like protein 2 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016791
|
GO:0008150_0.903|GO:0005575_0.797|GO:0110165_0.797|GO:0009987_0.781|GO:0065007_0.744|GO:0050789_0.716|GO:0005622_0.663|GO:0016020_0.659|GO:0050794_0.645|GO:0003674_0.579|GO:0043226_0.576|GO:0043229_0.532|GO:0043227_0.502
|
IPR004274+315-474_318-462_321-481+|IPR011948+321-483+|IPR023214+309-489+|IPR036412+308-485+|IPR050365+153-487+
|
SM00577+318-462+
|
PF03031+321-481+NLI_interacting_factor-like_phosphatase
|
G3DSA:3.40.50.1000:FF:000015+308-488+CTD_small_phosphatase-like_protein_2
|
PTHR12210+153-487+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-277;526-702
|
1.000
|
278-525
|
2hhl_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.568
|
76262.920
|
4.516
|
-30.000
|
23.219
|
7.407
|
52.707
|
47.293
|
10.114
|
13.105
|
57.123
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
darkorange
|
2212.454
|
3829.811
|
2234.535
|
1229.629
|
1113.724
|
1903.999
|
1801.356
|
1532.705
|
545.053
|
4153.538
|
2607.044
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.006
|
-1.776
|
-0.754
|
-0.174
|
0.789
|
— |
-0.417
|
0.375
|
— | — | — | — | — |
No JSON data available for plots.