Hg_chrom9_TN10mRNA_16684
Organism: Heterodera glycines Gene Locus: chr9:703188-712374 Feature type: polypeptideProtein Sequence
Length: 1,566
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.728 | 1.129 | 1.01 | 0.903 | 0.905 | 1.294 | 0.73 | 1.66 | 0.979 | 1.527 | 0.435 | 1.653 | 1.384 | 0.958 | 1.147 | 0.894 | 0.921 | 1.316 | 0.344 | 0.826 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_15773
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_Clustered
|
0.945
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.001
|
— | — |
0.484
|
0.076
|
0.009
|
0.498
|
0.246
|
0.389
|
0.239
|
0.007
|
0.280
|
0.071
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012476
|
1.000
|
1.000
|
Hsc_gene_21343.t1
|
Hsc_gene_21343.t1;Hsc_gene_21345.t1;Hsc_gene_21345.t2
|
— |
Q9N4C2.2 Probable cleavage and polyadenylation specificity factor subunit 1 [Caenorhabditis elegans]
|
KAF7630856.1 CPSF_A domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003676|GO:0005515|GO:0005634
|
GO:0005575_0.624|GO:0110165_0.604|GO:0008150_0.599|GO:0003674_0.581|GO:0009987_0.520|GO:0016020_0.513
|
IPR004871+1194-1531+|IPR015943+13-426_556-762_1123-1469+|IPR018846+91-697+|IPR050358+10-1559+
|
— |
PF03178+1194-1531+CPSF_A_subunit_region|PF10433+91-697+Mono-functional_DNA-alkylating_methyl_methanesulfonate_N-term
|
— |
PTHR10644+10-1559+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-1566
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.520
|
175175.570
|
6.077
|
-13.000
|
22.797
|
11.558
|
44.572
|
55.428
|
11.814
|
10.983
|
50.958
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
blue
|
3414.955
|
2433.036
|
1698.609
|
2084.302
|
2226.010
|
1559.328
|
2766.150
|
1038.321
|
1117.846
|
8924.886
|
5579.012
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.749
|
-0.360
|
0.405
|
— |
-0.499
|
0.838
|
-0.693
|
1.557
|
-3.098
|
— | — | — | — |
No JSON data available for plots.