Hg_chrom9_TN10mRNA_16686
Organism: Heterodera glycines Gene Locus: chr9:715288-718398 Feature type: polypeptideProtein Sequence
Length: 529
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.495 | 0.791 | 0.894 | 0.782 | 0.882 | 1.115 | 0.72 | 0.378 | 0.756 | 1.456 | 0.945 | 1.334 | 0.63 | 0.872 | 1.312 | 1.404 | 1.178 | 0.859 | 0.145 | 0.389 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_15775
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-Not_Clustered
|
0.824
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
LGEV,RKGTPTAATPSRQRRG
|
— | — |
61-84
|
0.921
|
— | — |
0.000
|
— | — |
0.751
|
0.200
|
0.020
|
0.410
|
0.037
|
0.032
|
0.079
|
0.013
|
0.092
|
0.085
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012477
|
1.000
|
1.000
|
Hsc_gene_21341.t1
|
— | — |
O89033.2 Cell division control protein 6 homolog [Mus musculus]
|
KAI3413356.1 AAA ATPase [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005524|GO:0016887
|
GO:0008150_0.844|GO:0005575_0.782|GO:0110165_0.774|GO:0009987_0.756|GO:0005622_0.703|GO:0003674_0.680|GO:0005488_0.657|GO:0043226_0.645|GO:0016020_0.642|GO:0043229_0.630|GO:0008152_0.567|GO:0043170_0.559|GO:0044238_0.557|GO:0044237_0.556|GO:0009058_0.554|GO:0044249_0.543|GO:0043227_0.542|GO:0009059_0.540|GO:0006139_0.538|GO:0034654_0.529|GO:0065007_0.524|GO:0090304_0.523|GO:0141187_0.521|GO:0043231_0.520|GO:0050789_0.518
|
IPR003593+37-172+|IPR003959+41-165+|IPR027417+1-170_36-241+|IPR050311+2-488+
|
SM00382+37-172+
|
PF00004+41-165+ATPase_family_associated_with_various_cellular_activities_(AAA)
|
— |
PTHR10763+2-488+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
271-364
|
2.000
|
1-270;365-529
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.864
|
56442.470
|
9.256
|
15.000
|
23.629
|
4.537
|
48.393
|
51.607
|
13.422
|
10.208
|
56.711
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
460.598
|
404.439
|
417.115
|
638.740
|
928.781
|
577.720
|
568.409
|
396.628
|
567.866
|
114.779
|
308.959
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.184
|
0.522
|
0.723
|
0.508
|
-0.670
|
— |
-0.645
|
0.661
|
— | — | — | — | — |
No JSON data available for plots.