SCN Proteipedia

Hg_chrom9_TN10mRNA_16690

Organism: Heterodera glycines Gene Locus: chr9:732084-741566 Feature type: polypeptide

Protein Sequence

Length: 1,594

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.641	0.905	0.821	0.498	0.617	2.976	0.963	1.757	0.683	1.128	0.39	1.365	0.592	0.989	0.999	1.192	0.987	0.732	0.241	0.332	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom9_TN10gene_15779	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	20-Egg_ppJ2_pJ2_J3_J4	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	RKRR,RKAIESLIKRLRDKRE,RRSPSAAGTGACRRRVP,KKAKLEEAPEVEEEEKRKE	—	—	—	—	—	—	0.000	—	—	0.926	0.088	0.011	0.325	0.056	0.059	0.044	0.013	0.039	0.025

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0004879	1.000	2.000	Hsc_gene_21337.t1;Hsc_gene_21337.t2	Hsc_gene_21337.t1	—	P97471.2 Mothers against decapentaplegic homolog 4 [Mus musculus]	KAI3413361.1 Mothers against decapentaplegic 4 [Globodera pallida]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515\|GO:0005667\|GO:0006355	GO:0008150_0.923\|GO:0009987_0.858\|GO:0065007_0.834\|GO:0050789_0.815\|GO:0050794_0.812\|GO:0005575_0.802\|GO:0110165_0.800\|GO:0032501_0.769\|GO:0032502_0.763\|GO:0048856_0.754\|GO:0005622_0.717\|GO:0007275_0.690\|GO:0048518_0.674\|GO:0003674_0.672\|GO:0008152_0.657\|GO:0050896_0.652\|GO:0016020_0.651\|GO:0019222_0.650\|GO:0044238_0.649\|GO:0005488_0.644\|GO:0043170_0.641\|GO:0048522_0.632\|GO:0080090_0.632\|GO:0060255_0.629\|GO:0051716_0.600\|GO:0043226_0.598\|GO:0048519_0.572\|GO:0031323_0.564\|GO:0044237_0.564\|GO:0030154_0.561\|GO:0048869_0.561\|GO:0009058_0.560\|GO:0043229_0.560\|GO:0044249_0.543\|GO:0007154_0.540\|GO:0009059_0.540\|GO:0009889_0.539\|GO:0010556_0.539\|GO:0031326_0.539\|GO:0023052_0.538\|GO:0010467_0.535\|GO:0010468_0.535\|GO:0006139_0.531\|GO:0043227_0.528\|GO:0034654_0.527\|GO:0097159_0.526\|GO:0016070_0.525\|GO:0090304_0.525\|GO:0141187_0.521\|GO:0032774_0.520\|GO:0019219_0.516\|GO:0007165_0.515\|GO:0051252_0.515\|GO:0048513_0.512\|GO:0048523_0.510\|GO:0043231_0.508\|GO:0006351_0.506\|GO:2001141_0.505\|GO:0006355_0.504	IPR001132+1373-1594_1375-1572_1425-1541+\|IPR003619+780-889_786-885+\|IPR008984+1423-1541+\|IPR013019+764-891+\|IPR013790+759-1541+\|IPR017855+1389-1588+\|IPR036578+755-892_781-885+	SM00523+780-889+\|SM00524+1375-1572+	PF03165+786-885+MH1_domain\|PF03166+1425-1541+MH2_domain	—	PTHR13703+759-1541+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-285;383-760;963-1009;1086-1291	4.000	286-382;761-962;1010-1085;1292-1594	5nm9_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.752	168748.750	7.024	16.000	19.197	7.089	49.059	50.941	10.979	8.218	56.399

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	tan	4649.661	9678.520	6507.038	7582.741	2839.285	3322.907	1461.453	1918.454	8502.732	1473.820	4486.210

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.801	-0.489	0.329	-1.449	0.242	-1.176	-0.894	—	2.414	—	—	—	—

No JSON data available for plots.

Back to Browser