Hg_chrom9_TN10mRNA_16691
Organism: Heterodera glycines Gene Locus: chr9:770630-772968 Feature type: polypeptideProtein Sequence
Length: 150
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.085 | 0.775 | 0.97 | 0.23 | 0.667 | 0.171 | 1.349 | 3.0 | 0.444 | 0.811 | 1.212 | 1.176 | 1.296 | 1.538 | 0.816 | 0.667 | 0.546 | 1.313 | 3.077 | 1.176 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_15780
|
— | — |
0.778
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— | — |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
18-ppJ2_pJ2_J3_J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — | — | — | — | — | — | — |
0.001
|
— | — |
0.078
|
0.906
|
0.009
|
0.119
|
0.043
|
0.016
|
0.029
|
0.004
|
0.033
|
0.009
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012481
|
1.000
|
1.000
|
Hsc_gene_21330.t1
|
Hsc_gene_21330.t1
|
— |
Q20779.1 Cytochrome c oxidase subunit 6A, mitochondrial [Caenorhabditis elegans]
|
KAI6239406.1 Cytochrome c oxidase subunit [Aphelenchoides fujianensis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005743|GO:0005751
|
GO:0005575_0.693|GO:0110165_0.690|GO:0016020_0.588|GO:0005622_0.529|GO:0005737_0.518|GO:0043226_0.502
|
IPR001349+36-121_54-129+|IPR036418+49-131_52-125+
|
— |
PF02046+36-121+Cytochrome_c_oxidase_subunit_VIa
|
— |
PTHR11504+54-129+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
123-150
|
1.000
|
1-122
|
5z62_G
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.931
|
16636.930
|
9.583
|
8.500
|
27.333
|
18.667
|
39.333
|
60.667
|
18.000
|
9.333
|
54.667
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
4840.695
|
2336.750
|
4917.283
|
3956.346
|
5099.437
|
5936.794
|
2533.711
|
5494.777
|
7704.708
|
4046.349
|
5614.217
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.844
|
0.623
|
-0.205
|
0.334
|
0.234
|
-1.219
|
— |
-0.975
|
— | — | — | — | — |
No JSON data available for plots.