SCN Proteipedia

Hg_chrom9_TN10mRNA_16695

Organism: Heterodera glycines Gene Locus: chr9:780733-782953 Feature type: polypeptide

Protein Sequence

Length: 119

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.075	0.391	1.222	2.028	0.98	1.077	0.8	1.681	0.934	1.363	0.764	1.483	0.467	0.162	2.229	0.72	1.515	0.637	0.646	0.494	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom9_TN10gene_15784	—	—	1.000	1.000	1.000	1.000	1.000	1.000	2.000	1.000	1.000	—

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	10-Pre_planta	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	mitochondrion	—	—	—	—	—	—	—	—	0.000	—	—	0.301	0.442	0.083	0.329	0.080	0.065	0.101	0.112	0.265	0.367

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0000444	7.000	1.000	Hsc_gene_21329.t1	Hsc_gene_21329.t1	—	O62193.1 Probable DNA replication complex GINS protein PSF2 [Caenorhabditis elegans]	KAI1728886.1 GINS complex protein domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0008150_0.915\|GO:0005575_0.910\|GO:0110165_0.902\|GO:0009987_0.860\|GO:0005622_0.828\|GO:0016020_0.794\|GO:0043226_0.776\|GO:0008152_0.758\|GO:0043229_0.753\|GO:0043170_0.751\|GO:0044237_0.747\|GO:0044238_0.744\|GO:0009058_0.743\|GO:0009059_0.738\|GO:0044249_0.738\|GO:0006139_0.726\|GO:0043227_0.721\|GO:0034654_0.718\|GO:0090304_0.712\|GO:0141187_0.710\|GO:0043231_0.702\|GO:0006259_0.675\|GO:0032991_0.673\|GO:0006260_0.670\|GO:0006261_0.670\|GO:0071897_0.670\|GO:0043228_0.626\|GO:0043232_0.621\|GO:0005634_0.619\|GO:0031974_0.585\|GO:0043233_0.584\|GO:0070013_0.584\|GO:0031981_0.572\|GO:0005654_0.561\|GO:0140513_0.553\|GO:0005694_0.549\|GO:0032993_0.545\|GO:0000228_0.540\|GO:0000808_0.540\|GO:0000811_0.540\|GO:0005656_0.540\|GO:0031261_0.540\|GO:0036387_0.540\|GO:0042555_0.540\|GO:0071162_0.540\|GO:0097373_0.540\|GO:0016043_0.516\|GO:0071840_0.516	IPR021151+50-97+\|IPR036224+49-110+	—	PF05916+50-97+GINS_complex_protein_helical_bundle_domain	—	—

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-119	8ouw_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.594	13371.300	8.400	6.000	31.933	7.563	52.101	47.899	19.328	12.605	49.580

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	1915.809	388.948	243.770	129.585	95.605	86.630	90.956	194.471	8748.777	1358.843	4525.958

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.906	-1.723	-0.801	-0.472	—	—	1.061	-0.956	—	-5.906	—	—	-4.453

No JSON data available for plots.

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