Hg_chrom9_TN10mRNA_16705
Organism: Heterodera glycines Gene Locus: chr9:814799-817176 Feature type: polypeptideProtein Sequence
Length: 330
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.564 | 2.185 | 0.716 | 0.836 | 1.717 | 1.088 | 0.613 | 1.212 | 0.875 | 1.147 | 1.469 | 1.426 | 0.842 | 0.874 | 0.371 | 1.255 | 0.497 | 1.377 | 0.466 | 0.535 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_15794
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_Clustered
|
0.945
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
FKVK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.589
|
0.120
|
0.009
|
0.614
|
0.099
|
0.160
|
0.134
|
0.007
|
0.151
|
0.105
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012482
|
1.000
|
1.000
|
Hsc_gene_21325.t1
|
— | — | — |
KAF7637475.1 Major sperm protein [Meloidogyne graminicola]
|
MDH7464156
|
0.290
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005789
|
GO:0005575_0.911|GO:0110165_0.903|GO:0005622_0.801|GO:0016020_0.765|GO:0005737_0.727|GO:0043226_0.696|GO:0043229_0.676|GO:0043227_0.652|GO:0043231_0.625|GO:0008150_0.610|GO:0071944_0.571|GO:0005886_0.554|GO:0009987_0.554
|
IPR000535+16-136_17-123+|IPR008962+12-124+|IPR013783+10-138+|IPR016763+16-219+
|
— |
PF00635+17-123+MSP_(Major_sperm_protein)_domain
|
— |
PTHR10809+16-219+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-1;145-276;325-330
|
2.000
|
2-144;277-324
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.710
|
36782.590
|
5.479
|
-5.000
|
28.182
|
7.879
|
53.636
|
46.364
|
13.939
|
14.242
|
51.212
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
grey
|
4935.167
|
4338.091
|
4521.960
|
4732.772
|
6340.142
|
4366.095
|
5888.199
|
4905.785
|
5263.564
|
4483.791
|
4817.979
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.170
|
— |
0.175
|
0.390
|
-0.523
|
0.443
|
— |
0.407
|
— | — | — | — | — |
No JSON data available for plots.