Hg_chrom9_TN10mRNA_16706
Organism: Heterodera glycines Gene Locus: chr9:818111-827277 Feature type: polypeptideProtein Sequence
Length: 1,315
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.344 | 1.326 | 0.539 | 0.341 | 0.431 | 2.437 | 1.077 | 2.357 | 0.625 | 0.627 | 0.426 | 1.253 | 0.549 | 1.55 | 0.729 | 1.51 | 1.234 | 0.887 | 0.526 | 0.671 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_15795
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Not_Clustered
|
0.505
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RRETKPFPALQRLKRHLR
|
— | — |
3-23
|
0.939
|
— | — |
0.000
|
— | — |
0.853
|
0.111
|
0.012
|
0.380
|
0.083
|
0.059
|
0.045
|
0.031
|
0.096
|
0.033
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012483
|
1.000
|
1.000
|
Hsc_gene_21324.t1
|
— | — |
Q86U86.1 Protein polybromo-1 [Homo sapiens]
|
KAI3413369.1 Protein polybromo-1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006338|GO:0016586
|
GO:0008150_0.802|GO:0005575_0.778|GO:0110165_0.775|GO:0009987_0.743|GO:0005622_0.673|GO:0003674_0.649|GO:0005488_0.597|GO:0043226_0.594|GO:0043229_0.584|GO:0016020_0.569|GO:0065007_0.564|GO:0050789_0.550|GO:0050794_0.539|GO:0008152_0.525|GO:0044238_0.517|GO:0043170_0.507|GO:0044237_0.501
|
IPR009071+466-534_467-521_471-526+|IPR013087+548-578_550-573+|IPR036910+458-525_472-521+|IPR037382+65-1211+
|
SM00398+466-534+
|
PF00505+471-526+HMG_(high_mobility_group)_box
|
— |
PTHR16062+65-1211+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-460;648-1315
|
1.000
|
461-647
|
7t91_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.959
|
138192.140
|
8.790
|
42.000
|
16.654
|
9.658
|
49.962
|
50.038
|
11.103
|
5.551
|
62.281
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey60
|
1887.941
|
4374.957
|
1961.565
|
1595.071
|
1590.303
|
1853.684
|
2438.892
|
1661.287
|
933.035
|
1756.556
|
1403.618
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.387
|
-1.593
|
-0.190
|
— |
0.235
|
0.406
|
— |
0.696
|
— | — | — | — | — |
No JSON data available for plots.