SCN Proteipedia

Hg_chrom9_TN10mRNA_16707

Organism: Heterodera glycines Gene Locus: chr9:833509-841474 Feature type: polypeptide

Protein Sequence

Length: 1,206

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.244	1.215	0.844	0.429	0.843	1.914	0.652	1.41	0.866	0.852	0.716	1.122	0.553	1.26	1.049	1.481	1.169	0.892	0.638	0.78	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom9_TN10gene_15796	—	—	0.889	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	—

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	19-Not_Clustered	0.870

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	PPTKRRK,KRRKVGP,RRLNADGTPAERLKPGRK	—	—	—	—	—	—	0.000	—	—	0.922	0.056	0.020	0.265	0.022	0.025	0.021	0.007	0.063	0.022

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	—	—	—	—	—	—	Q09948.1 Chromatin structure-remodeling complex subunit rsc4 [Schizosaccharomyces pombe 972h-]	KAI3413371.1 Protein polybromo-1 [Globodera pallida]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515\|GO:0006338\|GO:0016586	GO:0008150_0.965\|GO:0009987_0.892\|GO:0005575_0.858\|GO:0110165_0.858\|GO:0005622_0.787\|GO:0016020_0.762\|GO:0043226_0.738\|GO:0065007_0.737\|GO:0050789_0.724\|GO:0043229_0.716\|GO:0050794_0.692\|GO:0043227_0.671\|GO:0008152_0.654\|GO:0043170_0.654\|GO:0009058_0.640\|GO:0043231_0.639\|GO:0009059_0.633\|GO:0010467_0.633\|GO:0044237_0.633\|GO:0044249_0.633\|GO:0005634_0.625\|GO:0044238_0.622\|GO:0003674_0.621\|GO:0016043_0.609\|GO:0071840_0.609\|GO:0006139_0.606\|GO:0016070_0.603\|GO:0090304_0.603\|GO:0034654_0.599\|GO:0032774_0.598\|GO:0141187_0.598\|GO:0005488_0.579\|GO:0006351_0.570\|GO:0043228_0.558\|GO:0043232_0.558\|GO:0019222_0.542\|GO:0032502_0.536\|GO:0048856_0.536\|GO:0031323_0.534\|GO:0060255_0.524\|GO:0009889_0.514\|GO:0031326_0.514\|GO:0010556_0.508\|GO:0010468_0.507	IPR001487+37-147_58-128_58-132_187-318_208-299_210-303_537-646_557-627_557-631_574-590_590-608_608-627+\|IPR036427+42-148_59-145_187-354_202-319_527-647_529-643+\|IPR037382+185-364+	SM00297+37-147_187-318_537-646+	PF00439+58-132_210-303_557-631+Bromodomain	—	PTHR16062+185-364+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-45;309-540;667-760;812-871;1121-1206	4.000	46-308;541-666;761-811;872-1120	7y8r_U	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.851	131035.830	7.828	19.000	22.388	8.292	52.570	47.430	12.687	9.701	57.214

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	grey60	1264.872	1449.717	1451.220	1168.542	1266.762	1318.275	2127.046	1151.863	1365.715	784.496	1033.590

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.228	-0.448	-0.204	—	—	0.701	—	1.026	—	—	—	—	—

No JSON data available for plots.

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