Hg_chrom9_TN10mRNA_16708
Organism: Heterodera glycines Gene Locus: chr9:846359-846943 Feature type: polypeptideProtein Sequence
Length: 159
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.512 | 1.17 | 0.915 | 0.0 | 0.943 | 1.29 | 1.497 | 2.83 | 0.839 | 0.85 | 0.476 | 1.11 | 1.747 | 0.484 | 1.155 | 1.078 | 1.237 | 1.239 | 0.484 | 0.925 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_15797
|
— | — |
1.667
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
2.000
|
3.000
|
2.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
12-ppJ2_pJ2_J3_Females
|
0.993
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.351
|
0.211
|
0.019
|
0.585
|
0.125
|
0.175
|
0.102
|
0.006
|
0.272
|
0.113
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000290
|
8.000
|
1.000
|
Hsc_gene_20054.t1
|
— | — | — |
KAF7623530.1 Tyrosine-protein kinase, partial [Meloidogyne graminicola]
|
No
|
-0.280
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.914|GO:0009987_0.840|GO:0005575_0.828|GO:0110165_0.815|GO:0003674_0.675|GO:0005622_0.580|GO:0003824_0.561|GO:0071840_0.552|GO:0016043_0.546|GO:0016020_0.532|GO:0065007_0.513|GO:0005737_0.512|GO:0016740_0.501
|
IPR000980+1-85_4-66+|IPR036860+1-87_4-116+|IPR050198+3-116+
|
— |
PF00017+4-66+SH2_domain
|
— |
PTHR24418+3-116+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-159
|
7t1l_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.752
|
17571.430
|
6.773
|
1.500
|
25.157
|
15.723
|
50.314
|
49.686
|
14.465
|
10.692
|
52.830
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
brown
|
16.092
|
13.434
|
28.861
|
26.390
|
25.245
|
14.247
|
33.265
|
22.132
|
6.876
|
3.904
|
5.178
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.870
|
0.836
|
— | — |
-0.809
|
1.233
|
— | — | — | — | — | — | — |
No JSON data available for plots.