Hg_chrom9_TN10mRNA_16712
Organism: Heterodera glycines Gene Locus: chr9:864775-867383 Feature type: polypeptideProtein Sequence
Length: 218
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.693 | 1.493 | 1.001 | 0.633 | 0.765 | 1.176 | 0.491 | 0.917 | 1.325 | 1.488 | 2.085 | 1.619 | 0.892 | 0.706 | 0.843 | 1.18 | 0.526 | 1.182 | 0.353 | 0.27 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_15801
|
Hg_chrom9_TN10gene_15801
|
— |
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
KKLNKDKKLIKKLSK,KRFSGTVRLKHIPRPKTK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.451
|
0.337
|
0.048
|
0.562
|
0.282
|
0.129
|
0.232
|
0.099
|
0.049
|
0.089
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012485
|
2.000
|
0.000
|
0.000
|
— | — |
Q9N4I4.1 Large ribosomal subunit protein uL1 [Caenorhabditis elegans]
|
KAI3413375.1 ribosomal protein L1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003723|GO:0003735|GO:0006412|GO:0015934
|
GO:0005575_0.881|GO:0110165_0.875|GO:0005622_0.844|GO:0005737_0.733|GO:0043226_0.727|GO:0043229_0.714|GO:0008150_0.638|GO:0016020_0.533|GO:0043228_0.530|GO:0043232_0.530|GO:0009987_0.527|GO:0005829_0.515|GO:0003674_0.508
|
IPR002143+1-218+|IPR016095+67-156+|IPR023673+118-137+|IPR023674+8-218+|IPR028364+11-217_24-213+|IPR050257+16-208+
|
— |
PF00687+24-213+Ribosomal_protein_L1p/L10e_family
|
G3DSA:3.30.190.20:FF:000006+139-216+Ribosomal_protein|G3DSA:3.30.190.20:FF:000009+3-121+Ribosomal_protein_L10a|G3DSA:3.40.50.790:FF:000002+67-156+Ribosomal_protein
|
PTHR23105+16-208+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-23
|
1.000
|
24-218
|
8q87_Bv
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.583
|
24472.700
|
10.530
|
19.000
|
29.817
|
6.422
|
52.294
|
47.706
|
19.725
|
10.092
|
46.789
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.