SCN Proteipedia

Hg_chrom9_TN10mRNA_16715

Organism: Heterodera glycines Gene Locus: chr9:894162-950484 Feature type: polypeptide

Protein Sequence

Length: 1,476

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.882	0.788	1.146	0.561	1.378	2.067	0.79	2.27	0.693	0.961	0.636	1.275	0.885	0.847	1.203	1.036	1.077	0.811	0.886	0.937	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom9_TN10gene_15804	Hg_chrom9_TN10gene_15804	Hg_chrom9_TN10gene_15804	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	—	—

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_export_signal	cytoplasm	—	—	—	—	—	—	—	—	0.000	—	—	0.327	0.157	0.023	0.599	0.254	0.471	0.356	0.016	0.556	0.050

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0000623	2.000	5.000	Hsc_gene_1254.t1;Hsc_gene_1254.t2;Hsc_gene_1254.t3;Hsc_gene_1254.t4;Hsc_gene_22441.t1	Hsc_gene_1255.t1;Hsc_gene_1255.t2;Hsc_gene_1255.t5	—	P27715.4 Phorbol ester/diacylglycerol-binding protein unc-13 [Caenorhabditis elegans]	KAI3413378.1 Phorbol ester/diacylglycerol-binding protein unc-13, partial [Globodera pallida]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005509\|GO:0005543\|GO:0007268\|GO:0019992	GO:0005575_0.901\|GO:0110165_0.894\|GO:0008150_0.877\|GO:0009987_0.840\|GO:0065007_0.819\|GO:0050789_0.796\|GO:0003674_0.790\|GO:0050794_0.779\|GO:0016020_0.740\|GO:0071944_0.667\|GO:0016043_0.664\|GO:0071840_0.664\|GO:0005886_0.652\|GO:0051179_0.645\|GO:0005622_0.621\|GO:0051234_0.620\|GO:0006810_0.617\|GO:0048518_0.600\|GO:0006996_0.575\|GO:0030054_0.566\|GO:0050896_0.551\|GO:0051641_0.547\|GO:0007154_0.539\|GO:0061024_0.539\|GO:0023052_0.536\|GO:0005488_0.525\|GO:0043226_0.520\|GO:0016192_0.517\|GO:0010646_0.514\|GO:0023051_0.512\|GO:0016050_0.508\|GO:0045202_0.505	IPR000008+1-97_3-94_4-97_1167-1291_1185-1292_1185-1293_1201-1213_1225-1238_1246-1254+\|IPR002219+1061-1111_1062-1111+\|IPR020454+1059-1073_1075-1084_1088-1099_1100-1112+\|IPR027080+1-1475+\|IPR035892+1-128_3-138_1169-1315_1186-1325+\|IPR037302+1184-1310+\|IPR046349+1050-1111+	SM00109+1062-1111+\|SM00239+3-94_1185-1292+	PF00130+1062-1111+Phorbol_esters/diacylglycerol_binding_domain_(C1_domain)\|PF00168+4-97_1185-1293+C2_domain	G3DSA:2.60.40.150:FF:000002+1169-1315+Protein_unc-13_homolog_B	PTHR10480+1-1475+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	141-945	2.000	1-140;946-1476	7t81_Y	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.639	166482.940	5.565	-32.500	29.201	12.060	54.472	45.528	14.634	14.566	49.119

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	—	—	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	—	—	—	—	—	—	—	—	—	—	—	—

No JSON data available for plots.

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