Hg_chrom9_TN10mRNA_16719
Organism: Heterodera glycines Gene Locus: chr9:978685-980765 Feature type: polypeptideProtein Sequence
Length: 173
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.739 | 1.344 | 1.156 | 0.997 | 0.771 | 1.186 | 0.619 | 0.867 | 1.285 | 1.25 | 2.365 | 1.36 | 0.803 | 0.778 | 0.826 | 1.156 | 0.569 | 0.788 | 0.445 | 0.34 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_15808
|
— | — |
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-Not_Clustered
|
0.742
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
KKLNKDKKLIKKLSK,KRFSGTVRLKHIPRPKTK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.393
|
0.329
|
0.034
|
0.465
|
0.125
|
0.058
|
0.077
|
0.036
|
0.094
|
0.157
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012485
|
2.000
|
0.000
|
0.000
|
— | — |
Q9N4I4.1 Large ribosomal subunit protein uL1 [Caenorhabditis elegans]
|
KAI3413375.1 ribosomal protein L1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003723|GO:0003735|GO:0006412|GO:0015934
|
GO:0005575_0.876|GO:0110165_0.874|GO:0005622_0.855|GO:0005737_0.733|GO:0043226_0.728|GO:0043229_0.717|GO:0008150_0.631|GO:0043228_0.575|GO:0043232_0.563|GO:0005829_0.552|GO:0003674_0.523|GO:0009987_0.513|GO:0016020_0.503
|
IPR002143+1-166+|IPR016095+67-156+|IPR023673+118-137+|IPR023674+8-164+|IPR028364+11-163_24-164+|IPR050257+15-166+
|
— |
PF00687+24-164+Ribosomal_protein_L1p/L10e_family
|
G3DSA:3.30.190.20:FF:000009+3-121+Ribosomal_protein_L10a|G3DSA:3.40.50.790:FF:000002+67-156+Ribosomal_protein
|
PTHR23105+15-166+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-23
|
1.000
|
24-173
|
8q87_Bv
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.542
|
19372.560
|
10.399
|
16.500
|
32.370
|
6.358
|
54.335
|
45.665
|
21.387
|
10.983
|
47.399
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
1471.559
|
621.330
|
1002.337
|
1442.859
|
1456.035
|
1284.916
|
1671.023
|
840.134
|
798.232
|
2719.909
|
1896.333
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.461
|
1.078
|
0.634
|
— |
-0.165
|
0.391
|
-0.723
|
1.139
|
-1.897
|
— | — | — | — |
No JSON data available for plots.