Hg_chrom9_TN10mRNA_16720
Organism: Heterodera glycines Gene Locus: chr9:1007268-1019758 Feature type: polypeptideProtein Sequence
Length: 974
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.824 | 0.74 | 0.989 | 0.425 | 1.54 | 2.264 | 0.868 | 2.567 | 0.57 | 0.805 | 0.436 | 1.268 | 0.998 | 1.165 | 1.236 | 1.085 | 1.094 | 0.747 | 0.948 | 0.846 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_15809
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
0.996
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
RRSITPAFRRTPTTRRTFR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.347
|
0.117
|
0.054
|
0.672
|
0.218
|
0.190
|
0.236
|
0.034
|
0.464
|
0.105
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000623
|
2.000
|
5.000
|
Hsc_gene_1254.t1;Hsc_gene_1254.t2;Hsc_gene_1254.t3;Hsc_gene_1254.t4;Hsc_gene_22441.t1
|
— | — |
P27715.4 Phorbol ester/diacylglycerol-binding protein unc-13 [Caenorhabditis elegans]
|
KAI3413378.1 Phorbol ester/diacylglycerol-binding protein unc-13, partial [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0007268|GO:0019992
|
GO:0008150_0.966|GO:0009987_0.926|GO:0005575_0.923|GO:0110165_0.923|GO:0065007_0.900|GO:0050789_0.888|GO:0003674_0.885|GO:0050794_0.870|GO:0016020_0.827|GO:0071840_0.800|GO:0048518_0.797|GO:0016043_0.796|GO:0051179_0.766|GO:0071944_0.763|GO:0005886_0.754|GO:0051234_0.746|GO:0006810_0.739|GO:0051641_0.731|GO:0006996_0.718|GO:0005622_0.706|GO:0005488_0.698|GO:0016192_0.693|GO:0061024_0.692|GO:0016050_0.685|GO:0046903_0.680|GO:0032940_0.679|GO:0140352_0.679|GO:0061025_0.675|GO:0048284_0.674|GO:0006887_0.670|GO:0006906_0.670|GO:0017156_0.670|GO:0045055_0.670|GO:0090174_0.670|GO:0099500_0.670|GO:0140029_0.670|GO:0005515_0.664|GO:0030054_0.655|GO:0043226_0.650|GO:0050896_0.643|GO:0048522_0.621|GO:0043229_0.620|GO:0045202_0.607|GO:0005737_0.597|GO:0007154_0.595|GO:0023052_0.591|GO:0043227_0.589|GO:0010646_0.574|GO:0023051_0.570|GO:0098793_0.554|GO:0065008_0.553|GO:0043231_0.551|GO:0048786_0.545|GO:0044085_0.543|GO:0022607_0.539|GO:0051649_0.537|GO:0007267_0.524|GO:0007268_0.522|GO:0098916_0.522|GO:0099536_0.522|GO:0099537_0.522|GO:0043933_0.520|GO:0051640_0.518|GO:0051656_0.518|GO:0065003_0.518|GO:0050804_0.515|GO:0051648_0.515|GO:0051650_0.515|GO:0099177_0.515|GO:0023061_0.511|GO:0006836_0.508|GO:0007269_0.508|GO:0016079_0.508|GO:0016082_0.508|GO:0032252_0.508|GO:0032253_0.508|GO:0048167_0.508|GO:0099003_0.508|GO:0099504_0.508|GO:0099643_0.508|GO:1990504_0.508
|
IPR000008+1-97_3-94_4-89+|IPR027080+1-907+|IPR035892+1-128_3-138+
|
SM00239+3-94+
|
PF00168+4-89+C2_domain
|
— |
PTHR10480+1-907+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
204-974
|
1.000
|
1-203
|
2cjt_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.639
|
109754.150
|
5.232
|
-31.000
|
28.747
|
12.834
|
55.031
|
44.969
|
14.066
|
14.682
|
49.487
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
blue
|
385.341
|
79.828
|
92.216
|
41.929
|
8.421
|
13.392
|
20.892
|
133.062
|
24.883
|
1521.051
|
879.836
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-1.066
|
-1.029
|
-2.348
|
— | — |
3.215
|
-2.531
|
-6.052
|
— |
-6.887
|
— | — |
No JSON data available for plots.