Hg_chrom9_TN10mRNA_16725
Organism: Heterodera glycines Gene Locus: chr9:1094261-1095931 Feature type: polypeptideProtein Sequence
Length: 156
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.969 | 1.193 | 0.816 | 0.663 | 0.641 | 1.644 | 0.382 | 1.603 | 0.997 | 1.126 | 1.36 | 2.262 | 2.137 | 0.37 | 1.047 | 0.458 | 0.736 | 1.651 | 1.479 | 0.754 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_15814
|
— | — |
1.111
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_described
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.668
|
0.290
|
0.002
|
0.386
|
0.152
|
0.166
|
0.244
|
0.048
|
0.041
|
0.234
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000064
|
17.000
|
2.000
|
Hsc_gene_1260.t1;Hsc_gene_9420.t1
|
Hsc_gene_1260.t1
|
— |
Q6DID3.1 SR-related and CTD-associated factor 8 [Mus musculus]
|
KAI3413382.1 Protein NRD1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.920|GO:0009987_0.865|GO:0008152_0.788|GO:0044238_0.768|GO:0044237_0.763|GO:0009058_0.756|GO:0043170_0.740|GO:0005575_0.737|GO:0044249_0.737|GO:0110165_0.734|GO:0009059_0.724|GO:0010467_0.714|GO:0006139_0.713|GO:0034654_0.697|GO:0090304_0.696|GO:0016070_0.691|GO:0141187_0.690|GO:0032774_0.689|GO:0003674_0.670|GO:0005622_0.659|GO:0016020_0.658|GO:0043226_0.630|GO:0043229_0.619|GO:0005488_0.584|GO:0043227_0.584|GO:0043231_0.581|GO:0065007_0.553|GO:0005515_0.547|GO:0050789_0.542|GO:0050794_0.524
|
IPR006569+1-141_8-131_8-138+|IPR008942+3-135_3-140+|IPR051485+14-129+
|
SM00582+8-138+
|
PF04818+8-131+CID_domain
|
— |
PTHR23140+14-129+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-156
|
2diw_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.610
|
18188.350
|
10.198
|
11.500
|
25.641
|
15.385
|
44.872
|
55.128
|
17.308
|
8.333
|
43.590
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
grey
|
40.040
|
35.695
|
22.293
|
24.334
|
34.422
|
23.943
|
23.928
|
15.067
|
127.225
|
12.376
|
61.597
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.911
|
-0.690
|
— | — | — | — | — |
0.809
|
— | — | — | — | — |
No JSON data available for plots.