SCN Proteipedia

Hg_chrom9_TN10mRNA_16726

Organism: Heterodera glycines Gene Locus: chr9:1106676-1130343 Feature type: polypeptide

Protein Sequence

Length: 1,165

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.719	1.078	1.03	0.829	1.144	1.651	0.542	1.288	0.916	1.415	1.197	1.767	1.192	0.66	0.963	0.822	1.013	1.001	0.99	0.858	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom9_TN10gene_15815	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	13-Not_Clustered	0.692

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_export_signal	cytoplasm	—	KKRK	—	—	—	—	—	—	0.000	—	—	0.262	0.214	0.014	0.592	0.266	0.483	0.439	0.029	0.539	0.064

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0000577	3.000	4.000	Hsc_gene_1256.t1;Hsc_gene_4618.t1;Hsc_gene_4618.t2;Hsc_gene_4620.t1	Hsc_gene_1256.t1;Hsc_gene_4620.t1	—	P27715.4 Phorbol ester/diacylglycerol-binding protein unc-13 [Caenorhabditis elegans]	KAI3413378.1 Phorbol ester/diacylglycerol-binding protein unc-13, partial [Globodera pallida]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0007268\|GO:0019992	GO:0005575_0.900\|GO:0110165_0.896\|GO:0008150_0.847\|GO:0009987_0.797\|GO:0065007_0.759\|GO:0003674_0.758\|GO:0016020_0.733\|GO:0050789_0.732\|GO:0050794_0.718\|GO:0071944_0.658\|GO:0005886_0.646\|GO:0016043_0.646\|GO:0071840_0.646\|GO:0051179_0.639\|GO:0051234_0.628\|GO:0006810_0.624\|GO:0005622_0.594\|GO:0006996_0.584\|GO:0051641_0.583\|GO:0030054_0.573\|GO:0061024_0.562\|GO:0016192_0.559\|GO:0016050_0.550\|GO:0046903_0.542\|GO:0140352_0.541\|GO:0032940_0.540\|GO:0045202_0.536\|GO:0061025_0.533\|GO:0048284_0.532\|GO:0006887_0.531\|GO:0006906_0.531\|GO:0090174_0.531\|GO:0099500_0.531\|GO:0140029_0.531\|GO:0048518_0.530\|GO:0045055_0.527\|GO:0043226_0.520\|GO:0005737_0.511\|GO:0023052_0.503\|GO:0007154_0.501	IPR000008+126-251_144-252_149-253_977-1106_997-1105_997-1108+\|IPR010439+476-566_477-962+\|IPR014770+557-700+\|IPR014772+803-962+\|IPR027080+8-1149+\|IPR035892+147-275_149-285_962-1113_973-1109+	SM00239+144-252_997-1105+\|SM01145+476-566+	PF00168+149-253_997-1108+C2_domain\|PF06292+477-962+MUN_domain	G3DSA:1.10.357.50:FF:000001+599-769+Protein_unc-13_homolog_B\|G3DSA:2.60.40.150:FF:000002+131-275+Protein_unc-13_homolog_B\|G3DSA:2.60.40.150:FF:000014+966-1115+protein_unc-13_homolog_B	PTHR10480+8-1149+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	79-124	2.000	1-78;125-1165	5uf7_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.563	133400.920	7.550	16.000	27.725	11.073	50.730	49.270	15.193	12.532	45.408

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	turquoise	886.588	918.093	923.764	389.634	126.114	183.162	281.170	1031.761	219.003	2269.432	1390.677

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.221	-1.374	-1.136	-1.658	0.552	0.629	2.398	-1.736	-3.499	—	-3.724	—	—

No JSON data available for plots.

Back to Browser