Hg_chrom9_TN10mRNA_16731
Organism: Heterodera glycines Gene Locus: chr9:1187694-1188812 Feature type: polypeptideProtein Sequence
Length: 173
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.075 | 1.21 | 0.736 | 1.196 | 1.156 | 0.741 | 0.963 | 2.312 | 0.385 | 0.937 | 0.788 | 1.36 | 2.248 | 0.889 | 2.359 | 0.661 | 0.663 | 0.613 | 0.889 | 0.34 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_15820
|
— | — |
1.111
|
2.000
|
1.000
|
1.000
|
— |
2.000
|
2.000
|
2.000
|
— | — |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
THRRRRRRTRKAPVKIKDNR
|
5-25
|
0.978
|
— | — | — | — |
0.000
|
— | — |
0.620
|
0.354
|
0.016
|
0.477
|
0.076
|
0.017
|
0.026
|
0.035
|
0.184
|
0.268
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000290
|
8.000
|
1.000
|
Hsc_gene_20054.t1
|
— | — |
P34265.4 Probable tyrosine-protein kinase kin-31 [Caenorhabditis elegans]
|
KAF7636115.1 Protein kinase domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.190
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004672|GO:0006468
|
GO:0008150_0.913|GO:0032502_0.752|GO:0048856_0.752|GO:0009987_0.715|GO:0065007_0.696|GO:0050789_0.688|GO:0050794_0.660|GO:0032501_0.642|GO:0050896_0.638|GO:0051716_0.613|GO:0003674_0.606|GO:0007154_0.588|GO:0023052_0.587|GO:0007165_0.574|GO:0005575_0.543|GO:0110165_0.536|GO:0008152_0.534|GO:0044237_0.512|GO:0043170_0.502
|
IPR001245+80-106+
|
— |
PF07714+80-106+Protein_tyrosine_and_serine/threonine_kinase
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
136-173
|
1.000
|
1-135
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.720
|
19826.510
|
10.220
|
14.000
|
32.370
|
15.029
|
49.133
|
50.867
|
21.387
|
10.983
|
47.399
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.