Hg_chrom9_TN10mRNA_16749
Organism: Heterodera glycines Gene Locus: chr9:1314319-1322737 Feature type: polypeptideProtein Sequence
Length: 769
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.817 | 1.633 | 0.828 | 0.628 | 1.062 | 1.3 | 0.697 | 1.3 | 1.156 | 1.3 | 0.709 | 1.377 | 0.939 | 1.05 | 1.353 | 1.598 | 0.981 | 0.433 | 1.0 | 0.306 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_15836
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
18-Not_Clustered
|
0.776
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
KRRS
|
27-47
|
0.992
|
25-48
|
0.954
|
— | — |
0.000
|
— | — |
0.239
|
0.188
|
0.051
|
0.622
|
0.210
|
0.279
|
0.288
|
0.080
|
0.482
|
0.077
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001446
|
2.000
|
3.000
|
Hsc_gene_1268.t1;Hsc_gene_1268.t2;Hsc_gene_1268.t3
|
Hsc_gene_1267.t1;Hsc_gene_1267.t2;Hsc_gene_1268.t1;Hsc_gene_1268.t2;Hsc_gene_1268.t3
|
— | — |
KAI1721632.1 cell division protein anillin domain-containing protein [Ditylenchus destructor]
|
No
|
-0.270
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.951|GO:0005575_0.922|GO:0110165_0.917|GO:0009987_0.893|GO:0065007_0.882|GO:0050789_0.869|GO:0050794_0.855|GO:0016020_0.822|GO:0048518_0.764|GO:0048522_0.758|GO:0005622_0.550|GO:0043226_0.512
|
IPR012966+40-148+
|
— |
PF08174+40-148+Cell_division_protein_anillin
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-27;136-226;423-769
|
2.000
|
28-135;227-422
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.897
|
85358.810
|
7.920
|
13.000
|
24.837
|
8.322
|
54.096
|
45.904
|
13.914
|
10.923
|
51.756
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
turquoise
|
396.336
|
41.322
|
754.795
|
390.746
|
427.939
|
290.140
|
266.772
|
1036.693
|
36.224
|
503.648
|
303.324
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.964
|
3.104
|
-0.843
|
— |
-0.546
|
— |
1.737
|
-1.820
|
-3.919
|
— | — | — | — |
No JSON data available for plots.