Hg_chrom9_TN10mRNA_16753
Organism: Heterodera glycines Gene Locus: chr9:1328753-1344189 Feature type: polypeptideProtein Sequence
Length: 1,124
(Signal peptide: 1-23)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.807 | 1.51 | 0.906 | 0.583 | 0.875 | 1.027 | 0.826 | 0.89 | 1.443 | 1.31 | 0.539 | 1.675 | 1.335 | 0.633 | 1.325 | 1.029 | 1.05 | 1.011 | 0.821 | 0.994 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_15838
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
mitochondria
|
— |
16-49
|
0.960
|
— | — |
1-23
|
0.997
|
1.000
|
1.000
|
1.000
|
0.084
|
0.055
|
0.036
|
0.286
|
0.264
|
0.539
|
0.257
|
0.045
|
0.833
|
0.089
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012493
|
1.000
|
1.000
|
Hsc_gene_1264.t2
|
Hsc_gene_1264.t1;Hsc_gene_1264.t2
|
— |
O62179.2 Receptor-type guanylate cyclase gcy-20 [Caenorhabditis elegans]
|
AAC72366.2 guanylyl cyclase [Heterodera glycines]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004383|GO:0004672|GO:0005524|GO:0006182|GO:0006468|GO:0009190|GO:0016849|GO:0035556
|
GO:0008150_0.962|GO:0005575_0.795|GO:0110165_0.774|GO:0050896_0.694|GO:0009987_0.683|GO:0003674_0.615|GO:0032501_0.614|GO:0016020_0.600|GO:0071944_0.570|GO:0005886_0.546
|
IPR000719+577-848+|IPR001054+888-1083_917-1101_923-1100_924-1054+|IPR001245+631-846+|IPR001828+61-427+|IPR011009+616-854+|IPR011645+873-909+|IPR018297+1031-1054+|IPR028082+39-501+|IPR029787+911-1102_918-1101+|IPR050401+132-1116+
|
SM00044+888-1083+
|
PF00211+917-1101+Adenylate_and_Guanylate_cyclase_catalytic_domain|PF01094+61-427+Receptor_family_ligand_binding_region|PF07701+873-909+Heme_NO_binding_associated|PF07714+631-846+Protein_tyrosine_and_serine/threonine_kinase
|
G3DSA:3.30.70.1230:FF:000023+885-1106+Guanylate_cyclase
|
PTHR11920+132-1116+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1124-1124
|
1.000
|
1-1123
|
8fx4_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.739
|
125938.680
|
7.211
|
8.000
|
22.064
|
11.032
|
46.174
|
53.826
|
11.833
|
10.231
|
50.623
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |