Hg_chrom9_TN10mRNA_16754
Organism: Heterodera glycines Gene Locus: chr9:1356095-1365686 Feature type: polypeptideProtein Sequence
Length: 690
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.927 | 1.079 | 0.843 | 1.649 | 0.725 | 1.226 | 0.552 | 1.522 | 0.902 | 1.175 | 0.725 | 1.961 | 1.248 | 0.864 | 1.863 | 0.952 | 1.022 | 0.878 | 1.561 | 0.426 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_15839
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
8-Not_Clustered
|
0.676
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— |
RRRR,PLLKRRV,RKQLQLVFWMPIRRREN,RRRENGELPCPVKKHRQ
|
6-43
|
0.988
|
— | — | — | — |
0.000
|
— | — |
0.148
|
0.189
|
0.060
|
0.265
|
0.556
|
0.185
|
0.335
|
0.033
|
0.459
|
0.064
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003528
|
2.000
|
1.000
|
Hsc_gene_25828.t1
|
Hsc_gene_16216.t1;Hsc_gene_16219.t1;Hsc_gene_25797.t1;Hsc_gene_25803.t1;Hsc_gene_25825.t1;Hsc_gene_25828.t1;Hsc_gene_25828.t2
|
— |
Q94BX4.1 Phosphatidylinositol N-acetylglucosaminyltransferase subunit A [Arabidopsis thaliana]
|
KAI1693355.1 PIGA (GPI anchor biosynthesis) domain-containing protein [Ditylenchus destructor]
|
No
|
0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.644|GO:0005575_0.601|GO:0110165_0.601|GO:0009987_0.585|GO:0003674_0.539|GO:0016020_0.504
|
IPR028098+6-82+
|
— |
PF13439+6-82+Glycosyltransferase_Family_4
|
— |
PTHR45871+227-322+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-690
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.705
|
78647.760
|
9.455
|
44.500
|
25.942
|
11.014
|
48.261
|
51.739
|
16.957
|
8.986
|
49.855
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
666.553
|
1265.059
|
744.644
|
276.424
|
707.903
|
876.419
|
769.620
|
976.675
|
48.810
|
773.284
|
462.795
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.996
|
-2.332
|
-1.319
|
1.326
|
0.322
|
-0.177
|
— | — |
-4.135
|
— | — | — | — |
No JSON data available for plots.