Hg_chrom9_TN10mRNA_16763
Organism: Heterodera glycines Gene Locus: chr9:1404452-1413236 Feature type: polypeptideProtein Sequence
Length: 550
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.867 | 1.142 | 0.76 | 0.878 | 0.788 | 1.166 | 0.758 | 1.0 | 1.697 | 1.548 | 0.854 | 1.07 | 1.313 | 1.224 | 1.002 | 0.805 | 1.103 | 0.964 | 0.42 | 0.428 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_15848
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Migratory
|
0.995
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.596
|
0.196
|
0.093
|
0.467
|
0.196
|
0.267
|
0.256
|
0.153
|
0.302
|
0.383
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012496
|
1.000
|
1.000
|
Hsc_gene_22185.t1
|
Hsc_gene_22185.t1
|
— |
Q5R9G9.1 Medium-chain acyl-CoA ligase ACSF2, mitochondrial [Pongo abelii]
|
KAI1721643.1 AMP-binding enzyme domain-containing protein [Ditylenchus destructor]
|
No
|
0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.786|GO:0005575_0.731|GO:0110165_0.725|GO:0003674_0.714|GO:0005622_0.637|GO:0008152_0.625|GO:0009987_0.612|GO:0005737_0.608|GO:0003824_0.582|GO:0016020_0.571|GO:0043226_0.506
|
IPR000873+38-422+|IPR020845+223-234+|IPR042099+28-461+
|
— |
PF00501+38-422+AMP-binding_enzyme
|
— |
PTHR43201+27-462+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-550
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.816
|
60553.470
|
8.591
|
14.500
|
21.455
|
8.727
|
43.273
|
56.727
|
12.545
|
8.909
|
50.545
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
turquoise
|
559.006
|
304.451
|
843.840
|
402.115
|
217.639
|
206.754
|
145.520
|
965.231
|
15.967
|
1276.593
|
736.325
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.240
|
0.264
|
-0.960
|
-0.917
|
— |
-0.496
|
2.123
|
-2.589
|
-6.427
|
4.854
|
— | — | — |
No JSON data available for plots.