Hg_chrom9_TN10mRNA_16767
Organism: Heterodera glycines Gene Locus: chr9:1438035-1451707 Feature type: polypeptideProtein Sequence
Length: 1,032
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.755 | 1.239 | 1.515 | 0.2 | 1.357 | 1.217 | 0.554 | 0.921 | 0.883 | 0.969 | 1.424 | 1.368 | 0.834 | 0.652 | 1.641 | 1.509 | 0.699 | 0.734 | 0.522 | 0.655 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_15851
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
17-ppJ2_pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
GKRRS,RDTKRKT,RRRWRRDGDDKKKKQL,KKKKQLPSLSSSKSVKK,KKSSSRKYRDRRRKRSD,KKKQLPSLSSSKSVKKSLR,KRKTKENIDKLIDLAKKNK,RKTKENIDKLIDLAKKNKE,RRRKRSDSSSDEVKRKNKT
|
73-94
|
0.915
|
41-61
|
0.931
|
— | — |
0.010
|
— | — |
0.308
|
0.122
|
0.005
|
0.556
|
0.086
|
0.160
|
0.129
|
0.018
|
0.430
|
0.180
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001447
|
3.000
|
2.000
|
Hsc_gene_22180.t1;Hsc_gene_22181.t1
|
— | — | — |
KAI3413405.1 hypothetical protein GPALN_010899, partial [Globodera pallida]
|
MEA3248518
|
0.120
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-106;445-807;968-1032
|
2.000
|
107-444;808-967
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.800
|
117514.020
|
9.123
|
19.500
|
35.756
|
7.752
|
60.659
|
39.341
|
19.283
|
16.473
|
48.450
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
2013.954
|
5.595
|
1444.409
|
1051.166
|
176.833
|
26.098
|
40.858
|
66.853
|
8337.374
|
1503.589
|
4432.354
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
7.786
|
7.419
|
-0.350
|
-2.604
|
-2.745
|
0.655
|
1.255
|
— |
2.362
|
-2.812
|
-2.965
|
— | — |
No JSON data available for plots.