Hg_chrom9_TN10mRNA_16768
Organism: Heterodera glycines Gene Locus: chr9:1453187-1464769 Feature type: polypeptideProtein Sequence
Length: 1,063
(Signal peptide: 1-23)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.7 | 1.488 | 1.437 | 0.195 | 1.395 | 1.158 | 0.582 | 1.176 | 0.711 | 1.081 | 1.44 | 1.494 | 0.862 | 0.633 | 1.613 | 1.438 | 0.709 | 0.684 | 0.651 | 0.498 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_15852
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
17-ppJ2_pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm
|
chloroplast
|
SGGRRRSNARK,KKWEGNHFVEPRGKRG,RRRWRRGGDDDKKKKQL,KKKKQLPSLSSSKSVKK,KKSSSRKYRDRRRKRSD,KRETKASIDELVDLAKKNK,RRRKRSDSSSDEVKRKNKT
|
— | — |
64-85
|
0.989
|
1-23
|
0.981
|
0.985
|
0.000
|
0.000
|
0.373
|
0.109
|
0.005
|
0.600
|
0.089
|
0.201
|
0.154
|
0.016
|
0.454
|
0.206
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001447
|
3.000
|
2.000
|
Hsc_gene_22180.t1;Hsc_gene_22181.t1
|
— | — | — |
KAI3413405.1 hypothetical protein GPALN_010899, partial [Globodera pallida]
|
WP_241936297
|
0.280
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-107;476-834;951-1063
|
2.000
|
108-475;835-950
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.825
|
121318.240
|
9.319
|
24.500
|
36.030
|
7.996
|
61.336
|
38.664
|
19.755
|
16.275
|
47.977
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
1889.486
|
7.499
|
419.272
|
344.846
|
42.622
|
8.567
|
10.121
|
20.961
|
9027.987
|
1175.305
|
4540.741
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
5.577
|
5.386
|
— |
-3.047
|
-2.302
|
— | — | — |
2.821
|
-4.553
|
-4.603
|
— | — |