Hg_chrom9_TN10mRNA_16769
Organism: Heterodera glycines Gene Locus: chr9:1468867-1480489 Feature type: polypeptideProtein Sequence
Length: 842
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.773 | 1.243 | 1.036 | 0.205 | 1.504 | 1.218 | 0.594 | 1.425 | 0.845 | 0.835 | 1.35 | 1.677 | 1.518 | 0.845 | 1.6 | 1.323 | 0.72 | 0.594 | 0.822 | 0.594 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_15853
|
— | — |
1.444
|
2.000
|
1.000
|
1.000
|
2.000
|
1.000
|
2.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
17-ppJ2_pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
RRRSVDGASARRRTI,KKIALHALLTERARRL,KKRASENYERSMRRKSV,KKLHKQNNRTRRTRRNDK,RKNGIVGKLLYDWEKKKLY,RRTRRNDKDADDPTKQLKR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.305
|
0.077
|
0.010
|
0.655
|
0.081
|
0.266
|
0.166
|
0.007
|
0.309
|
0.139
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012498
|
2.000
|
0.000
|
0.000
|
Hsc_gene_25040.t1
|
— | — |
KAI3413405.1 hypothetical protein GPALN_010899, partial [Globodera pallida]
|
HEV2885288
|
0.230
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-8;302-599;758-842
|
2.000
|
9-301;600-757
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.850
|
96991.780
|
9.740
|
29.000
|
34.323
|
11.401
|
58.076
|
41.924
|
19.596
|
14.727
|
45.249
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
1871.487
|
19.094
|
892.452
|
488.157
|
66.239
|
12.870
|
28.181
|
50.401
|
8670.519
|
1100.843
|
4344.990
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
5.316
|
4.537
|
-0.762
|
-2.916
|
-2.348
|
1.138
|
1.870
|
— |
2.877
|
-3.986
|
-3.759
|
— | — |
No JSON data available for plots.