Hg_chrom9_TN10mRNA_16772
Organism: Heterodera glycines Gene Locus: chr9:1492108-1494090 Feature type: polypeptideProtein Sequence
Length: 542
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.558 | 0.987 | 1.073 | 1.082 | 1.476 | 0.804 | 0.264 | 1.384 | 1.599 | 1.471 | 1.565 | 1.411 | 1.384 | 0.461 | 1.054 | 1.186 | 0.877 | 0.839 | 0.993 | 0.326 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_15855
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.688
|
0.162
|
0.074
|
0.317
|
0.116
|
0.117
|
0.112
|
0.122
|
0.079
|
0.051
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000422
|
6.000
|
2.000
|
Hsc_gene_18013.t1;Hsc_gene_18123.t1
|
Hsc_gene_18013.t1;Hsc_gene_18123.t1;Hsc_gene_3841.t1
|
— | — |
KAH7705065.1 zinc finger protein, partial [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0046983
|
GO:0005575_0.915|GO:0110165_0.910|GO:0005622_0.897|GO:0043226_0.845|GO:0016020_0.833|GO:0043229_0.832|GO:0003674_0.828|GO:0005737_0.815|GO:0043227_0.795|GO:0005488_0.782|GO:0043231_0.766|GO:0005515_0.754|GO:0005634_0.673|GO:0042802_0.668|GO:0031974_0.593|GO:0008150_0.592|GO:0043233_0.592|GO:0070013_0.592|GO:0031981_0.587|GO:0005654_0.569|GO:0009987_0.540
|
IPR008906+498-532+|IPR012337+133-528+|IPR052035+29-534+
|
— |
PF05699+498-532+hAT_family_C-terminal_dimerisation_region
|
— |
PTHR46481+29-534+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-542
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.565
|
62733.650
|
7.941
|
11.500
|
33.026
|
10.148
|
54.059
|
45.941
|
18.266
|
14.760
|
41.882
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
grey
|
11.670
|
0.000
|
3.939
|
4.134
|
2.470
|
0.245
|
0.202
|
1.654
|
4.146
|
43.203
|
26.465
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
6.312
|
6.476
|
— | — |
-3.301
|
— | — | — | — | — | — | — | — |
No JSON data available for plots.