Hg_chrom9_TN10mRNA_16774
Organism: Heterodera glycines Gene Locus: chr9:1504161-1522312 Feature type: polypeptideProtein Sequence
Length: 809
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.949 | 1.409 | 1.236 | 0.384 | 1.813 | 1.49 | 0.544 | 1.051 | 0.742 | 0.818 | 1.442 | 1.6 | 0.858 | 0.713 | 1.413 | 1.201 | 0.588 | 0.618 | 0.856 | 0.582 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_15857
|
— |
Hg_chrom9_TN10gene_15857
|
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
Hsc_gene_25038
|
— |
30-Not_Clustered
|
0.780
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KRAR,RRRR,KKIMSGITPKRKTKA,RKHYRRLRLNKKSKS,KKSGEKVPKSAAKNRGKAK,KKQEKGLKGMLNVRKHYRR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.764
|
0.091
|
0.022
|
0.492
|
0.030
|
0.047
|
0.060
|
0.022
|
0.267
|
0.060
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012500
|
1.000
|
1.000
|
Hsc_gene_25038.t1
|
— | — | — |
KAI3413405.1 hypothetical protein GPALN_010899, partial [Globodera pallida]
|
WP_137759738
|
0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
162-467;640-809
|
2.000
|
1-161;468-639
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.633
|
92491.700
|
6.394
|
-1.500
|
36.218
|
8.282
|
60.074
|
39.926
|
18.541
|
17.676
|
46.477
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
green
|
2772.323
|
5.632
|
137.261
|
739.576
|
304.449
|
48.003
|
72.702
|
43.980
|
2312.550
|
9887.647
|
6641.177
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4.373
|
6.893
|
2.536
|
-1.312
|
-2.651
|
0.610
|
— |
0.869
|
— | — |
-4.500
|
— | — |
No JSON data available for plots.