Hg_chrom9_TN10mRNA_16779
Organism: Heterodera glycines Gene Locus: chr9:1537502-1538407 Feature type: polypeptideProtein Sequence
Length: 152
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.3 | 1.377 | 0.598 | 0.681 | 0.877 | 0.843 | 0.47 | 4.276 | 1.023 | 1.245 | 1.096 | 1.548 | 0.548 | 0.38 | 1.343 | 0.564 | 0.971 | 0.997 | 1.012 | 1.354 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_15862
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.142
|
0.313
|
0.023
|
0.680
|
0.097
|
0.143
|
0.143
|
0.042
|
0.169
|
0.154
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012503
|
1.000
|
1.000
|
Hsc_gene_25034.t1
|
Hsc_gene_25034.t1
|
— |
A8NSD1.2 Thiamine thiazole synthase [Coprinopsis cinerea okayama7#130]
|
ACZ34282.1 thiazole synthase [Heterodera glycines]
|
KAI9573537
|
0.320
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.861|GO:0110165_0.861|GO:0008150_0.739|GO:0009987_0.672|GO:0005622_0.647|GO:0008152_0.635|GO:0044237_0.605|GO:0005737_0.604|GO:0009058_0.597|GO:0044249_0.574|GO:0044281_0.547|GO:0044283_0.514|GO:0003674_0.512|GO:1901615_0.512|GO:0006066_0.506|GO:1901617_0.504|GO:0006790_0.503|GO:0034308_0.503|GO:0046165_0.503|GO:0006766_0.502|GO:0009110_0.501|GO:0072527_0.501
|
IPR036188+60-119_85-124+
|
— |
PF01946+70-120+Thi4_family
|
— |
PTHR43422+58-119+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-152
|
3fpz_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.509
|
17481.060
|
9.924
|
14.500
|
30.921
|
16.447
|
50.000
|
50.000
|
22.368
|
8.553
|
44.737
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.