Hg_chrom9_TN10mRNA_16794
Organism: Heterodera glycines Gene Locus: chr9:1634490-1645241 Feature type: polypeptideProtein Sequence
Length: 819
(Signal peptide: 1-22)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.894 | 1.59 | 0.821 | 2.105 | 1.16 | 1.597 | 0.974 | 1.282 | 0.678 | 0.644 | 0.888 | 1.867 | 1.051 | 1.315 | 0.947 | 0.907 | 0.721 | 0.537 | 1.691 | 0.682 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_15875
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-Not_Clustered
|
0.920
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
— | — | — | — | — | — |
1-22
|
0.990
|
0.999
|
0.000
|
0.000
|
0.164
|
0.093
|
0.028
|
0.253
|
0.192
|
0.067
|
0.151
|
0.049
|
0.252
|
0.937
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012510
|
1.000
|
1.000
|
Hsc_gene_25017.t1
|
Hsc_gene_25017.t1
|
— |
Q19673.5 Putative tyrosinase-like protein tyr-3 [Caenorhabditis elegans]
|
ANB41563.1 tyrosinase-like protein [Heterodera schachtii]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016491
|
GO:0003674_0.797|GO:0005575_0.756|GO:0110165_0.752|GO:0008150_0.735|GO:0005622_0.567|GO:0005488_0.566|GO:0016020_0.553|GO:0008152_0.521|GO:0043226_0.517|GO:0009987_0.506
|
IPR002227+226-421_244-261_273-278_375-386_402-420_403-414+|IPR003582+564-600_565-599_608-643_608-644_609-643_680-715_680-716_681-715_724-758_724-759_725-758+|IPR008922+193-481_195-479+|IPR050316+158-637+
|
SM00254+564-600_608-644_680-716_724-759+
|
PF00264+226-421+Common_central_domain_of_tyrosinase|PF01549+565-599_608-643_680-715_724-758+ShK_domain-like
|
— |
PTHR11474+158-637+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-150;780-819
|
1.000
|
151-779
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.814
|
91134.280
|
6.657
|
2.500
|
24.542
|
10.867
|
48.352
|
51.648
|
13.065
|
11.477
|
54.457
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
purple
|
4024.207
|
116.726
|
4695.171
|
2797.128
|
8680.954
|
11104.617
|
5532.648
|
6140.302
|
298.062
|
2732.028
|
1688.900
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
5.103
|
4.446
|
-0.640
|
1.601
|
0.371
|
-0.996
|
-0.957
|
— |
-3.284
|
3.336
|
— | — | — |