Hg_chrom9_TN10mRNA_16795
Organism: Heterodera glycines Gene Locus: chr9:1648391-1657372 Feature type: polypeptideProtein Sequence
Length: 769
(Signal peptide: 1-19)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.149 | 1.3 | 0.757 | 1.973 | 0.867 | 1.234 | 0.96 | 1.235 | 0.78 | 0.879 | 0.749 | 1.836 | 1.12 | 1.325 | 1.194 | 0.836 | 0.895 | 0.493 | 1.5 | 0.803 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_15876
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
18-Not_Clustered
|
0.958
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
— | — | — | — | — | — |
1-19
|
0.998
|
1.000
|
0.000
|
0.000
|
0.123
|
0.103
|
0.046
|
0.186
|
0.189
|
0.127
|
0.148
|
0.061
|
0.325
|
0.951
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012511
|
1.000
|
1.000
|
Hsc_gene_25016.t1
|
Hsc_gene_25016.t1
|
— |
Q19673.5 Putative tyrosinase-like protein tyr-3 [Caenorhabditis elegans]
|
KAF7635299.1 Tyrosinase-like protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016491
|
GO:0003674_0.907|GO:0008150_0.773|GO:0005575_0.736|GO:0110165_0.736|GO:0003824_0.581|GO:0016020_0.578|GO:0005488_0.576|GO:0005622_0.572|GO:0008152_0.549|GO:0009987_0.537|GO:0005737_0.522
|
IPR002227+128-314_147-164_176-181_277-288_297-315_298-309+|IPR003582+453-488_453-489_454-488_497-532_497-533_498-532_567-603_568-602_611-646_612-645+|IPR008922+65-372_98-375+|IPR050316+79-526+
|
SM00254+453-489_497-533_567-603_611-646+
|
PF00264+128-314+Common_central_domain_of_tyrosinase|PF01549+453-488_497-532_568-602_612-645+ShK_domain-like
|
— |
PTHR11474+79-526+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
728-769
|
1.000
|
1-727
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.876
|
84929.520
|
8.002
|
20.500
|
22.627
|
11.183
|
44.343
|
55.657
|
13.264
|
9.363
|
54.876
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
turquoise
|
2077.175
|
359.052
|
3831.793
|
983.709
|
2455.367
|
3407.534
|
1420.420
|
10614.784
|
144.579
|
326.959
|
248.796
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.189
|
1.317
|
-1.855
|
1.288
|
0.487
|
-1.255
|
1.543
|
-2.766
|
— | — |
3.288
|
— | — |