Hg_chrom9_TN10mRNA_16796
Organism: Heterodera glycines Gene Locus: chr9:1659381-1667303 Feature type: polypeptideProtein Sequence
Length: 783
(Signal peptide: 1-22)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.936 | 1.158 | 0.766 | 2.026 | 1.0 | 1.113 | 0.821 | 1.149 | 0.851 | 0.725 | 0.619 | 1.728 | 1.171 | 1.105 | 1.668 | 1.113 | 0.9 | 0.735 | 1.572 | 0.826 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_15877
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
0.996
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
nucleus
|
KRRR,KKICEQLYRYDKKARE
|
— | — | — | — |
1-22
|
0.901
|
1.000
|
0.000
|
0.000
|
0.187
|
0.117
|
0.055
|
0.232
|
0.112
|
0.099
|
0.133
|
0.197
|
0.280
|
0.929
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004889
|
1.000
|
2.000
|
Hsc_gene_25015.t1;Hsc_gene_25015.t2
|
Hsc_gene_25014.t1;Hsc_gene_25015.t1;Hsc_gene_25015.t2
|
— |
Q19673.5 Putative tyrosinase-like protein tyr-3 [Caenorhabditis elegans]
|
KAF7635299.1 Tyrosinase-like protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016491
|
GO:0003674_0.849|GO:0008150_0.775|GO:0005575_0.704|GO:0110165_0.704|GO:0005488_0.606|GO:0005622_0.581|GO:0016020_0.581|GO:0008152_0.572|GO:0009987_0.543|GO:0043226_0.531|GO:0003824_0.525|GO:0009058_0.506|GO:0043229_0.502
|
IPR002227+147-335_165-182_194-199_295-306_315-333_316-327+|IPR003582+476-511_476-512_477-511_520-555_520-556_521-555_590-625_590-626_591-625_634-668_634-669_635-668+|IPR008922+118-391_119-403+|IPR050316+74-549+
|
SM00254+476-512_520-556_590-626_634-669+
|
PF00264+147-335+Common_central_domain_of_tyrosinase|PF01549+476-511_520-555_590-625_634-668+ShK_domain-like
|
— |
PTHR11474+74-549+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
719-783
|
1.000
|
1-718
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.880
|
87947.720
|
8.193
|
25.000
|
24.777
|
11.367
|
47.382
|
52.618
|
14.559
|
10.217
|
53.895
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
salmon
|
87.290
|
14.508
|
42.250
|
20.189
|
21.694
|
150.171
|
49.441
|
192.141
|
59.098
|
153.672
|
113.141
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.312
|
— |
-0.955
|
— |
2.805
|
-1.596
|
— |
-1.815
|
— | — | — | — | — |