Hg_chrom9_TN10mRNA_16801
Organism: Heterodera glycines Gene Locus: chr9:1709509-1738685 Feature type: polypeptideProtein Sequence
Length: 1,460
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.187 | 0.812 | 0.76 | 0.614 | 0.765 | 1.879 | 0.742 | 1.781 | 1.005 | 1.25 | 0.571 | 1.289 | 1.084 | 1.238 | 1.048 | 1.301 | 1.067 | 0.851 | 0.738 | 0.363 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_15880
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
3-Not_described
|
0.993
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — |
40-73
|
0.997
|
— | — | — | — |
0.001
|
— | — |
0.221
|
0.203
|
0.062
|
0.530
|
0.327
|
0.542
|
0.583
|
0.026
|
0.447
|
0.100
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004890
|
2.000
|
1.000
|
Hsc_gene_25008.t1
|
Hsc_gene_25008.t1;Hsc_gene_25009.t1;Hsc_gene_25009.t2
|
— |
Q9WU70.1 Syntaxin-binding protein 5 [Rattus norvegicus]
|
KAH7727748.1 syntaxin-binding protein 5-like protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.963|GO:0009987_0.927|GO:0005575_0.899|GO:0110165_0.895|GO:0005622_0.791|GO:0016020_0.708|GO:0043226_0.657|GO:0051179_0.653|GO:0071944_0.645|GO:0005737_0.640|GO:0051234_0.640|GO:0065007_0.619|GO:0043229_0.605|GO:0050789_0.602|GO:0006810_0.600|GO:0005886_0.595|GO:0050794_0.595|GO:0071840_0.562|GO:0003674_0.556|GO:0016043_0.552|GO:0043227_0.538
|
IPR000664+140-158_446-468_498-518_588-611_664-682+|IPR001680+145-185_186-226_284-324_326-368_336-377_340-368_523-604_642-681+|IPR013577+428-522+|IPR015943+142-289_290-699+|IPR019775+355-369+|IPR036322+150-680+
|
SM00320+145-185_186-226_284-324_326-368_523-604_642-681+
|
PF00400+340-368+WD_domain,_G-beta_repeat|PF08366+428-522+LLGL2
|
— |
PTHR10241+136-1456+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
364-433;707-788;873-1042;1355-1460
|
4.000
|
1-363;434-706;789-872;1043-1354
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.793
|
158898.130
|
7.757
|
28.000
|
21.233
|
9.658
|
47.671
|
52.329
|
12.466
|
8.767
|
53.562
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
blue
|
2331.002
|
1311.557
|
2025.117
|
820.224
|
457.221
|
624.721
|
1456.611
|
1258.288
|
1414.215
|
6154.821
|
4123.133
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.398
|
-0.815
|
-1.196
|
-0.876
|
0.466
|
1.230
|
0.904
|
0.353
|
— | — | — | — | — |
No JSON data available for plots.