SCN Proteipedia

Hg_chrom9_TN10mRNA_16802

Organism: Heterodera glycines Gene Locus: chr9:1744570-1749084 Feature type: polypeptide

Protein Sequence

Length: 612

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.102	1.862	0.951	0.62	0.654	2.011	0.545	1.797	0.835	0.949	0.644	2.211	0.454	1.068	1.034	1.914	0.884	0.619	0.503	0.288	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom9_TN10gene_15881	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	28-Egg	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	RRRR,KRAEQMPTPMKRRYQ,RKEKNGDSLNSMARKAQR,RRASSNCSSSGGGGQRKEK	—	—	35-89	0.812	—	—	0.000	—	—	0.906	0.112	0.029	0.330	0.012	0.013	0.015	0.058	0.042	0.043

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0012514	1.000	1.000	Hsc_gene_25007.t1	Hsc_gene_25007.t1;Hsc_gene_25011.t1;Hsc_gene_25011.t2	—	Q19418.1 Zinc finger protein ztf-2 [Caenorhabditis elegans]	KAI1728959.1 c2H2-type zinc-finger domain-containing protein [Ditylenchus destructor]	No	-0.280

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0008150_0.970\|GO:0050789_0.943\|GO:0065007_0.943\|GO:0009987_0.939\|GO:0050794_0.939\|GO:0008152_0.896\|GO:0019222_0.896\|GO:0031323_0.896\|GO:0044237_0.896\|GO:0003674_0.893\|GO:0005488_0.893\|GO:0043170_0.889\|GO:0060255_0.889\|GO:0032502_0.887\|GO:0048856_0.887\|GO:0044238_0.882\|GO:0080090_0.882\|GO:0009058_0.875\|GO:0009889_0.875\|GO:0031326_0.874\|GO:0044249_0.874\|GO:0009059_0.872\|GO:0010556_0.872\|GO:0010467_0.868\|GO:0010468_0.868\|GO:0006139_0.864\|GO:0034654_0.864\|GO:0090304_0.864\|GO:0141187_0.864\|GO:0016070_0.860\|GO:0019219_0.860\|GO:0051252_0.860\|GO:0006351_0.858\|GO:0032774_0.858\|GO:2001141_0.853\|GO:0006355_0.852\|GO:0003676_0.849\|GO:0097159_0.849\|GO:0048519_0.823\|GO:0006366_0.817\|GO:0003677_0.816\|GO:0043565_0.816\|GO:0003690_0.814\|GO:1990837_0.814\|GO:0006357_0.809\|GO:0048523_0.803\|GO:0000976_0.792\|GO:0001067_0.792\|GO:0048513_0.791\|GO:0140110_0.773\|GO:0009892_0.765\|GO:0031324_0.765\|GO:0009653_0.757\|GO:0000977_0.756\|GO:0010605_0.755\|GO:0003700_0.746\|GO:0009890_0.746\|GO:0010558_0.746\|GO:0031327_0.746\|GO:0045934_0.746\|GO:0051253_0.746\|GO:1902679_0.746\|GO:0045892_0.745\|GO:0000122_0.733\|GO:0000987_0.725\|GO:0000978_0.708\|GO:0009887_0.708\|GO:0110040_0.670	IPR013087+262-284_262-289_290-313+\|IPR036236+263-309+	SM00355+262-284_290-313+	—	—	PTHR24376+263-313+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	82-262;322-550;593-612	3.000	1-81;263-321;551-592	8tho_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.922	66525.760	7.724	12.000	22.059	6.863	56.699	43.301	12.908	9.150	57.516

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	magenta	277.865	574.072	131.603	168.056	129.498	140.447	141.651	203.755	125.871	562.849	375.573

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-2.354	-1.910	0.461	-0.408	—	—	—	-0.383	—	—	—	—	—

No JSON data available for plots.

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