Hg_chrom9_TN10mRNA_16804
Organism: Heterodera glycines Gene Locus: chr9:1759462-1762827 Feature type: polypeptideProtein Sequence
Length: 345
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.416 | 0.809 | 0.949 | 0.4 | 0.918 | 1.189 | 0.863 | 1.884 | 0.515 | 1.567 | 0.791 | 1.194 | 1.369 | 0.892 | 0.651 | 1.201 | 0.618 | 1.098 | 0.892 | 0.682 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_15883
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Migratory
|
0.988
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
cytoplasm|mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.202
|
0.707
|
0.017
|
0.546
|
0.052
|
0.095
|
0.054
|
0.040
|
0.062
|
0.223
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012516
|
1.000
|
1.000
|
Hsc_gene_372.t1
|
Hsc_gene_372.t1
|
— |
O17730.1 Putative thiosulfate sulfurtransferase mpst-1 [Caenorhabditis elegans]
|
KAH7724521.1 Protein MPST-1 [Aphelenchus avenae]
|
No
|
0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016783
|
GO:0005575_0.879|GO:0110165_0.870|GO:0005622_0.807|GO:0005737_0.793|GO:0016020_0.791|GO:0003674_0.660|GO:0043226_0.651|GO:0043229_0.642|GO:0043227_0.634|GO:0008150_0.622|GO:0043231_0.617|GO:0009987_0.554
|
IPR001763+24-165_63-168_68-161_203-340_216-343_219-335+|IPR036873+13-181_15-176_198-343_219-336+|IPR045078+18-340+
|
SM00450+24-165_203-340+
|
PF00581+68-161_219-335+Rhodanese-like_domain
|
— |
PTHR11364+18-340+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-345
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.594
|
37368.410
|
6.310
|
-1.500
|
22.899
|
12.174
|
43.188
|
56.812
|
12.174
|
10.725
|
53.333
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
magenta
|
433.158
|
218.297
|
886.819
|
602.309
|
331.467
|
305.618
|
516.192
|
1036.985
|
50.388
|
395.642
|
247.676
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.794
|
1.327
|
-0.450
|
-0.894
|
— |
0.767
|
1.671
|
-0.868
|
— | — | — | — | — |
No JSON data available for plots.