Hg_chrom9_TN10mRNA_16815
Organism: Heterodera glycines Gene Locus: chr9:1799735-1807100 Feature type: polypeptideProtein Sequence
Length: 295
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.182 | 0.946 | 1.109 | 0.468 | 1.186 | 2.26 | 0.686 | 2.373 | 0.979 | 0.779 | 0.77 | 1.396 | 1.224 | 0.652 | 1.107 | 0.92 | 0.945 | 0.514 | 1.565 | 0.997 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_15893
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cell_membrane
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.135
|
0.278
|
0.053
|
0.471
|
0.159
|
0.275
|
0.349
|
0.017
|
0.695
|
0.170
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012519
|
1.000
|
1.000
|
Hsc_gene_395.t1
|
Hsc_gene_395.t1;Hsc_gene_397.t1
|
— | — |
KAI3413424.1 Globin [Globodera pallida]
|
No
|
-0.110
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0019825|GO:0020037
|
— |
IPR000971+128-269_149-272+|IPR009050+127-278+|IPR012292+123-283+|IPR044399+132-277+|IPR053341+56-285+
|
— |
PF00042+149-272+Globin
|
— |
PTHR47768+56-285+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-120;289-295
|
1.000
|
121-288
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.589
|
33669.300
|
6.383
|
-1.000
|
28.475
|
14.576
|
53.559
|
46.441
|
15.254
|
13.220
|
46.441
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
186.906
|
194.251
|
442.477
|
160.993
|
48.155
|
48.651
|
74.171
|
308.740
|
16.002
|
326.675
|
193.529
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.956
|
-0.408
|
-1.349
|
-1.776
|
— |
0.619
|
2.567
|
-1.916
|
— | — | — | — |
7.844
|
No JSON data available for plots.