SCN Proteipedia

Hg_chrom9_TN10mRNA_16816

Organism: Heterodera glycines Gene Locus: chr9:1819146-1830502 Feature type: polypeptide

Protein Sequence

Length: 1,542

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.814	1.237	0.967	0.335	1.816	2.178	0.432	0.973	0.879	1.428	1.209	1.869	1.027	0.486	1.403	0.76	0.776	0.727	0.599	0.591	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom9_TN10gene_15894	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	22-Not_Clustered	0.830

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm	—	KKPR,KPRK,RKLREELDRNKRRLE,KKLPIYSETLIEAYKGKKR,KKTDDDIVAQLEEQRKRSQ	—	—	33-53	0.996	—	—	0.000	—	—	0.280	0.216	0.016	0.686	0.058	0.162	0.178	0.023	0.340	0.076

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0012520	1.000	1.000	Hsc_gene_398.t1	Hsc_gene_398.t1	—	Q99323.2 Myosin heavy chain, non-muscle [Drosophila melanogaster]	KAI1725891.1 myosin head (motor domain) domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003774\|GO:0005524\|GO:0016459\|GO:0051015	GO:0005575_0.924\|GO:0008150_0.923\|GO:0110165_0.921\|GO:0005622_0.896\|GO:0043226_0.852\|GO:0009987_0.799\|GO:0043229_0.797\|GO:0005737_0.742\|GO:0043228_0.691\|GO:0043232_0.691\|GO:0005856_0.662\|GO:0003674_0.660\|GO:0016020_0.648\|GO:0032991_0.646\|GO:0099080_0.606\|GO:0032501_0.578\|GO:0099081_0.565\|GO:0099512_0.565\|GO:0016043_0.549\|GO:0071840_0.549\|GO:0065007_0.539\|GO:0071944_0.539\|GO:0005886_0.534\|GO:0005488_0.526\|GO:0050789_0.526\|GO:0005515_0.517	IPR001609+148-868_154-867_156-855_184-203_240-265_315-342_546-574_600-628+\|IPR002928+932-1216_1213-1539+\|IPR004009+100-150_101-145+\|IPR008989+99-149+\|IPR027417+105-929+\|IPR036961+152-798+	SM00242+148-868+	PF00063+156-855+Myosin_head_(motor_domain)\|PF01576+932-1216_1213-1539+Myosin_tail\|PF02736+101-145+Myosin_N-terminal_SH3-like_domain	G3DSA:1.10.10.820:FF:000001+371-426+Myosin_heavy_chain\|G3DSA:1.20.120.720:FF:000001+427-535+Myosin_heavy_chain,_muscle\|G3DSA:1.20.5.4820:FF:000002+799-927+Myosin_heavy_chain_10\|G3DSA:1.20.58.530:FF:000003+558-755+Myosin_heavy_chain_10\|G3DSA:2.30.30.360:FF:000001+99-149+Myosin_heavy_chain\|G3DSA:3.40.850.10:FF:000101+149-246+Slow_myosin_heavy_chain_2	PTHR45615+101-1214+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-88;963-1502	2.000	89-962;1503-1542	3jax_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.599	179245.010	6.230	-6.000	33.009	8.431	56.874	43.126	16.796	16.213	39.624

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	turquoise	grey	6379.518	5065.637	3282.665	4442.706	5912.211	9803.023	9536.240	13245.762	7878.944	2768.093	4958.458

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.855	-0.326	0.545	0.381	0.744	—	0.332	-0.332	—	—	—	—	—

No JSON data available for plots.

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