SCN Proteipedia

Hg_chrom9_TN10mRNA_16819

Organism: Heterodera glycines Gene Locus: chr9:1845022-1852015 Feature type: polypeptide

Protein Sequence

Length: 699

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.882	0.532	1.925	0.592	2.289	1.944	0.749	0.787	0.509	0.522	1.127	1.346	0.556	1.183	1.139	0.756	0.539	1.062	1.541	0.421	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom9_TN10gene_15897	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	19-Eggs_Female	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	KKKR,KKRRK,RKKRK,RKERSPSASTSSTVGKPKK,KRRAKVLDELKERRRAKRQ,RRAKVLDELKERRRAKRQR,KKRQHIDVKRGPVEKKGRRG	—	—	—	—	—	—	0.000	—	—	0.978	0.046	0.037	0.189	0.021	0.031	0.057	0.001	0.041	0.035

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0012522	1.000	1.000	Hsc_gene_400.t1	—	—	—	KAI3413430.1 histone H3-K9 methyltransferase KMT1 [Globodera pallida]	No	0.060

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0008150_0.960\|GO:0005575_0.931\|GO:0009987_0.929\|GO:0110165_0.928\|GO:0003674_0.913\|GO:0005488_0.913\|GO:0005622_0.900\|GO:0016020_0.859\|GO:0043226_0.850\|GO:0065007_0.848\|GO:0050789_0.840\|GO:0043229_0.827\|GO:0050794_0.826\|GO:0043228_0.785\|GO:0043232_0.785\|GO:0005515_0.782\|GO:0005634_0.778\|GO:0043227_0.778\|GO:0043231_0.778\|GO:0008152_0.777\|GO:0043170_0.777\|GO:0009058_0.756\|GO:0009059_0.756\|GO:0010467_0.756\|GO:0044237_0.756\|GO:0044249_0.756\|GO:0044238_0.754\|GO:0006139_0.753\|GO:0019222_0.753\|GO:0031323_0.742\|GO:0060255_0.742\|GO:0090304_0.741\|GO:0034654_0.740\|GO:0141187_0.740\|GO:0080090_0.738\|GO:0016070_0.735\|GO:0048519_0.725\|GO:0032774_0.724\|GO:0009889_0.720\|GO:0031326_0.720\|GO:0010468_0.717\|GO:0010556_0.717\|GO:0048523_0.709\|GO:0019219_0.698\|GO:0051252_0.693\|GO:2001141_0.683\|GO:0009892_0.666\|GO:0031324_0.663\|GO:0009890_0.657\|GO:0010558_0.657\|GO:0010605_0.657\|GO:0031327_0.657\|GO:0006351_0.613\|GO:0005694_0.609\|GO:0006355_0.605\|GO:0000785_0.596\|GO:0045934_0.576\|GO:0051253_0.576\|GO:1902679_0.571\|GO:0031974_0.551\|GO:0031981_0.551\|GO:0043233_0.551\|GO:0070013_0.551\|GO:0005654_0.510	IPR000953+46-100_47-99_543-597+\|IPR016197+38-100+\|IPR023780+47-97+\|IPR051219+15-427+	SM00298+46-100_543-597+	PF00385+47-97+Chromo_(CHRromatin_Organisation_MOdifier)_domain	—	PTHR22812+15-427+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-475;636-699	1.000	476-635	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.961	79171.270	4.193	-73.500	38.913	7.010	57.368	42.632	14.592	24.320	50.215

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	grey	4389.131	5591.508	3858.327	3409.840	4099.870	4566.554	6427.787	4274.396	5350.404	3104.041	4066.768

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.765	-0.851	—	0.234	0.170	0.505	-0.202	0.733	—	—	—	—	—

No JSON data available for plots.

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