Hg_chrom9_TN10mRNA_16820
Organism: Heterodera glycines Gene Locus: chr9:1852860-1853710 Feature type: polypeptideProtein Sequence
Length: 91
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.278 | 0.256 | 0.0 | 1.895 | 0.733 | 0.282 | 1.047 | 1.099 | 0.733 | 0.297 | 2.331 | 1.939 | 0.305 | 0.0 | 1.794 | 0.628 | 1.801 | 1.499 | 0.845 | 1.616 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_15898
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
0.991
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRVCVGIWNCSKCHKK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.770
|
0.267
|
0.037
|
0.467
|
0.100
|
0.082
|
0.145
|
0.001
|
0.026
|
0.050
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012523
|
1.000
|
1.000
|
Hsc_gene_401.t1
|
Hsc_gene_401.t1
|
— |
Q9U2A8.3 Large ribosomal subunit protein eL43 [Caenorhabditis elegans]
|
KAI3413431.1 60S ribosomal protein L43 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003735|GO:0005840|GO:0006412
|
GO:0005575_0.924|GO:0110165_0.911|GO:0005622_0.741|GO:0003674_0.699|GO:0005737_0.676|GO:0043226_0.674|GO:0043229_0.643|GO:0005829_0.558|GO:0032991_0.546|GO:0043228_0.535|GO:0043232_0.535|GO:0005840_0.524|GO:0022626_0.524
|
IPR002674+1-91_4-72_4-88+|IPR011331+1-91+|IPR011332+10-82+|IPR050522+1-91+
|
— |
PF01780+4-88+Ribosomal_L37ae_protein_family
|
G3DSA:2.20.25.30:FF:000002+2-91+60S_ribosomal_protein_L37a
|
PTHR48129+1-91+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
87-91
|
1.000
|
1-86
|
9cai_Cp
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.944
|
10138.030
|
10.870
|
19.000
|
30.769
|
9.890
|
48.352
|
51.648
|
26.374
|
4.396
|
51.648
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
sienna3
|
8462.075
|
3657.379
|
7438.989
|
11031.456
|
12266.673
|
12463.868
|
5983.029
|
4508.855
|
8597.960
|
9066.766
|
8865.849
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.795
|
1.456
|
0.677
|
0.121
|
— |
-1.048
|
-1.573
|
0.552
|
— | — | — | — | — |
No JSON data available for plots.