SCN Proteipedia

Hg_chrom9_TN10mRNA_16825

Organism: Heterodera glycines Gene Locus: chr9:1857255-1862925 Feature type: polypeptide

Protein Sequence

Length: 1,126

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.971	0.971	1.163	0.306	1.584	1.412	0.825	0.577	0.868	0.864	1.036	0.627	0.691	1.127	1.214	1.319	1.296	0.807	0.615	0.392	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom9_TN10gene_15901	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	5-Not_Clustered	0.868

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	RKRG,KKVTDFNKRDYRKKIE,KKPRTATRRKRSKRGRRA,RKRRSAAPIFQSGGGRTKR,KRRSAAPIFQSGGGRTKRT	—	—	—	—	—	—	0.000	—	—	0.900	0.048	0.036	0.352	0.015	0.023	0.036	0.005	0.065	0.051

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0002536	2.000	2.000	Hsc_gene_405.t1;Hsc_gene_405.t2	—	—	—	KAF7637932.1 BRCT domain-containing protein [Meloidogyne graminicola]	No	-0.050

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0005575_0.949\|GO:0110165_0.949\|GO:0005622_0.884\|GO:0016020_0.870\|GO:0043226_0.836\|GO:0043229_0.814\|GO:0043227_0.774\|GO:0008150_0.742\|GO:0043231_0.741\|GO:0009987_0.700\|GO:0005634_0.667\|GO:0065007_0.663\|GO:0003674_0.650\|GO:0050789_0.644\|GO:0005488_0.623\|GO:0050794_0.620\|GO:0005515_0.595\|GO:0050896_0.585\|GO:0008152_0.553\|GO:0043170_0.553\|GO:0051716_0.552\|GO:0044238_0.538\|GO:0019222_0.534\|GO:0048519_0.531\|GO:0006139_0.524\|GO:0060255_0.520\|GO:0080090_0.516\|GO:0048523_0.514\|GO:0090304_0.511\|GO:0043228_0.510\|GO:0043232_0.510\|GO:0006950_0.509\|GO:0048583_0.496\|GO:0019219_0.487\|GO:0033554_0.485\|GO:0032502_0.482\|GO:0048856_0.482\|GO:0032501_0.471\|GO:0080134_0.468\|GO:0006259_0.464\|GO:0006974_0.463\|GO:0006281_0.457\|GO:0006302_0.457\|GO:0006310_0.457\|GO:0051052_0.457\|GO:0080135_0.456\|GO:0000018_0.453\|GO:0000724_0.453\|GO:0000725_0.453\|GO:0006282_0.453\|GO:0010569_0.453\|GO:2000779_0.453\|GO:0042393_0.443\|GO:0007275_0.442\|GO:0048518_0.440\|GO:0009058_0.439\|GO:0035064_0.439\|GO:0140030_0.439\|GO:0140034_0.439\|GO:0031323_0.433\|GO:0044237_0.433\|GO:0048731_0.432\|GO:0009059_0.430\|GO:0044249_0.430\|GO:0048522_0.430\|GO:0010467_0.429\|GO:0071840_0.427\|GO:0016043_0.423\|GO:0032991_0.423\|GO:0034654_0.418\|GO:0097159_0.412\|GO:0009889_0.408\|GO:0010468_0.408\|GO:0010556_0.408\|GO:0031326_0.408\|GO:0016070_0.406\|GO:0141187_0.405\|GO:0032774_0.401\|GO:0009893_0.400\|GO:0010604_0.395\|GO:0003676_0.394\|GO:0031325_0.393\|GO:0005694_0.387\|GO:0009891_0.387\|GO:0031328_0.387\|GO:0051239_0.387\|GO:0009892_0.384\|GO:0010557_0.384\|GO:0051252_0.383\|GO:0006351_0.382\|GO:0050793_0.382\|GO:0010605_0.379\|GO:0006355_0.378\|GO:2001141_0.378\|GO:0045935_0.376\|GO:0048584_0.371\|GO:0002376_0.370\|GO:0010628_0.369\|GO:0045934_0.367\|GO:0051094_0.366\|GO:0035861_0.365\|GO:0048585_0.365\|GO:0051240_0.365\|GO:0090734_0.365\|GO:0002682_0.361\|GO:0006955_0.361\|GO:0001775_0.360\|GO:0002684_0.360\|GO:0045321_0.360\|GO:0050776_0.360\|GO:0050778_0.360\|GO:0003677_0.359\|GO:0046649_0.358\|GO:0031974_0.357\|GO:0031981_0.357\|GO:0043233_0.357\|GO:0070013_0.357\|GO:0043565_0.356\|GO:0005737_0.355\|GO:0002200_0.354\|GO:0002204_0.354\|GO:0002208_0.354\|GO:0002250_0.354\|GO:0002252_0.354\|GO:0002263_0.354\|GO:0002285_0.354\|GO:0002312_0.354\|GO:0002366_0.354\|GO:0002377_0.354\|GO:0002381_0.354\|GO:0002440_0.354\|GO:0002443_0.354\|GO:0002449_0.354\|GO:0002460_0.354\|GO:0002520_0.354\|GO:0002562_0.354\|GO:0002637_0.354\|GO:0002639_0.354\|GO:0002694_0.354\|GO:0002696_0.354\|GO:0002697_0.354\|GO:0002699_0.354\|GO:0002700_0.354\|GO:0002702_0.354\|GO:0002703_0.354\|GO:0002705_0.354\|GO:0002706_0.354\|GO:0002708_0.354\|GO:0002712_0.354\|GO:0002714_0.354\|GO:0002819_0.354\|GO:0002821_0.354\|GO:0002822_0.354\|GO:0002824_0.354\|GO:0002889_0.354\|GO:0002891_0.354\|GO:0006303_0.354\|GO:0016064_0.354\|GO:0016444_0.354\|GO:0016445_0.354\|GO:0016447_0.354\|GO:0019724_0.354\|GO:0042113_0.354\|GO:0045190_0.354\|GO:0045191_0.354\|GO:0045738_0.354\|GO:0045830_0.354\|GO:0045910_0.354\|GO:0045911_0.354\|GO:0050864_0.354\|GO:0050865_0.354\|GO:0050867_0.354\|GO:0050871_0.354\|GO:0051053_0.354\|GO:0051054_0.354\|GO:0051249_0.354\|GO:0051251_0.354\|GO:2000042_0.354\|GO:2000780_0.354	IPR001357+880-981_882-968_882-971+\|IPR036420+880-983_882-989_986-1125_1004-1115+\|IPR047249+884-972+\|IPR047250+1003-1108+\|IPR047252+863-1124+	SM00292+882-971+	PF00533+882-968+BRCA1_C_Terminus_(BRCT)_domain\|PF18428+1024-1125+BRCA1_C_Terminus_(BRCT)_domain	—	PTHR15321+863-1124+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-422;566-831	2.000	423-565;832-1126	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.628	123063.830	4.875	-28.500	29.840	5.773	56.661	43.339	13.943	15.897	55.062

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	skyblue	grey	5300.628	6001.368	5599.037	6363.620	7067.900	6534.025	6403.181	5180.882	4172.559	3879.572	4005.138

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.330	—	0.293	0.120	—	—	-0.442	0.449	—	—	—	—	—

No JSON data available for plots.

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