Hg_chrom9_TN10mRNA_16826
Organism: Heterodera glycines Gene Locus: chr9:1863954-1865742 Feature type: polypeptideProtein Sequence
Length: 146
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.796 | 0.637 | 0.996 | 0.0 | 0.799 | 1.054 | 1.223 | 0.685 | 1.065 | 1.111 | 1.764 | 0.403 | 0.571 | 0.79 | 1.538 | 0.978 | 0.674 | 1.349 | 1.581 | 1.007 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_15902
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-Not_Clustered
|
0.573
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.381
|
0.478
|
0.019
|
0.517
|
0.215
|
0.047
|
0.113
|
0.007
|
0.072
|
0.115
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012524
|
1.000
|
1.000
|
Hsc_gene_406.t1
|
Hsc_gene_406.t1
|
— |
P39698.1 Small ribosomal subunit protein eS19S [Ascaris suum]
|
KAI3413434.1 40S ribosomal protein S19G [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003735|GO:0005840|GO:0006412
|
GO:0005575_0.869|GO:0110165_0.854|GO:0005622_0.813|GO:0043226_0.775|GO:0043229_0.774|GO:0005737_0.755|GO:0003674_0.688|GO:0005829_0.622|GO:0043228_0.589|GO:0043232_0.589|GO:0003735_0.548|GO:0005198_0.548|GO:0005840_0.548|GO:0022626_0.531|GO:0016020_0.518|GO:0008150_0.504
|
IPR001266+5-141_6-140_6-143+|IPR018277+90-109+|IPR036388+1-143+|IPR036390+6-141+
|
SM01413+6-143+
|
PF01090+6-140+Ribosomal_protein_S19e
|
G3DSA:1.10.10.10:FF:000118+2-144+40S_ribosomal_protein_S19
|
PTHR11710+5-141+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-3
|
1.000
|
4-146
|
9cai_AT
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.558
|
16251.710
|
10.726
|
14.000
|
30.822
|
8.904
|
48.630
|
51.370
|
20.548
|
10.274
|
49.315
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
green
|
11107.269
|
3538.415
|
4903.631
|
9437.274
|
9761.260
|
7946.015
|
5604.298
|
3287.300
|
28986.034
|
10175.457
|
18237.132
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.241
|
1.278
|
1.053
|
— |
-0.281
|
-0.493
|
-1.381
|
0.915
|
1.397
|
-1.466
|
— | — | — |
No JSON data available for plots.