Hg_chrom9_TN10mRNA_16829
Organism: Heterodera glycines Gene Locus: chr9:1869251-1871255 Feature type: polypeptideProtein Sequence
Length: 311
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.897 | 0.748 | 0.994 | 0.222 | 1.018 | 0.742 | 0.383 | 1.929 | 1.072 | 1.608 | 0.779 | 1.513 | 1.965 | 0.866 | 1.509 | 0.919 | 0.58 | 1.51 | 0.495 | 0.851 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_15905
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-J4_Female
|
0.989
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.814
|
0.111
|
0.020
|
0.665
|
0.032
|
0.091
|
0.081
|
0.015
|
0.063
|
0.017
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002537
|
2.000
|
2.000
|
Hsc_gene_409.t1;Hsc_gene_478.t1
|
Hsc_gene_409.t1
|
— |
P07818.1 G2/mitotic-specific cyclin-B [Arbacia punctulata]
|
KAI1723536.1 G2/mitotic-specific cyclin-B [Ditylenchus destructor]
|
No
|
-0.110
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016538|GO:0044772
|
GO:0005575_0.793|GO:0110165_0.766|GO:0008150_0.748|GO:0005622_0.712|GO:0009987_0.670|GO:0016020_0.629|GO:0043226_0.572|GO:0005737_0.565|GO:0043229_0.550|GO:0043227_0.513|GO:0043231_0.505
|
IPR004367+184-290_184-298+|IPR006671+59-182+|IPR013763+90-175_188-270+|IPR036915+47-181_183-290+|IPR039361+45-241+|IPR046965+5-294+
|
SM00385+90-175_188-270+|SM01332+184-298+
|
PF00134+59-182+Cyclin,_N-terminal_domain|PF02984+184-290+Cyclin,_C-terminal_domain
|
G3DSA:1.10.472.10:FF:000001+69-182+G2/mitotic-specific_cyclin
|
PTHR10177+45-241+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-2
|
1.000
|
3-311
|
2b9r_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.590
|
35792.600
|
8.870
|
9.000
|
27.974
|
14.469
|
44.051
|
55.949
|
16.399
|
11.576
|
44.695
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
orange
|
red
|
372.597
|
34.953
|
59.498
|
78.220
|
169.267
|
822.171
|
2222.235
|
405.887
|
4.146
|
204.917
|
118.873
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.531
|
1.024
|
0.508
|
1.084
|
2.293
|
1.446
|
-1.133
|
2.601
|
-5.769
|
— | — | — | — |
No JSON data available for plots.