Hg_chrom9_TN10mRNA_16831
Organism: Heterodera glycines Gene Locus: chr9:1875812-1878483 Feature type: polypeptideProtein Sequence
Length: 317
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.577 | 0.807 | 1.319 | 0.979 | 1.42 | 1.537 | 0.638 | 0.946 | 0.701 | 1.236 | 1.386 | 1.856 | 1.227 | 0.243 | 0.773 | 0.811 | 0.569 | 0.526 | 0.485 | 1.113 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_15907
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Not_Clustered
|
0.606
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— |
KKAQSMLAEAEKKLQK
|
— | — |
31-57
|
0.952
|
— | — |
0.000
|
— | — |
0.444
|
0.319
|
0.046
|
0.576
|
0.167
|
0.210
|
0.210
|
0.057
|
0.266
|
0.032
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012528
|
1.000
|
1.000
|
Hsc_gene_412.t1
|
Hsc_gene_412.t1
|
— |
Q9DB05.1 Alpha-soluble NSF attachment protein [Mus musculus]
|
KAI3413437.1 Alpha-soluble NSF attachment protein 1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515|GO:0006886
|
GO:0005575_0.843|GO:0110165_0.830|GO:0008150_0.765|GO:0016020_0.721|GO:0009987_0.703|GO:0005622_0.667|GO:0005737_0.616|GO:0071840_0.584|GO:0003674_0.583|GO:0016043_0.583|GO:0005488_0.531|GO:0005515_0.506|GO:0051179_0.502
|
IPR000744+3-298_8-299_36-55_205-224_245-265_276-296+|IPR011990+7-305_8-297+
|
— |
PF14938+8-298+Soluble_NSF_attachment_protein,_SNAP
|
— |
PTHR13768+3-298+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-13;308-317
|
1.000
|
14-307
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.731
|
35484.100
|
5.175
|
-6.000
|
30.599
|
10.726
|
49.211
|
50.789
|
14.826
|
15.773
|
46.372
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
midnightblue
|
1316.269
|
1542.942
|
1687.177
|
1357.173
|
1552.662
|
1893.236
|
1924.437
|
2145.762
|
905.606
|
540.703
|
697.090
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.322
|
-0.206
|
0.162
|
0.301
|
— | — | — | — | — | — | — | — |
No JSON data available for plots.