Hg_chrom9_TN10mRNA_16835
Organism: Heterodera glycines Gene Locus: chr9:1885208-1893197 Feature type: polypeptideProtein Sequence
Length: 238
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.466 | 0.391 | 1.07 | 0.0 | 1.611 | 1.724 | 0.4 | 0.84 | 0.747 | 1.817 | 1.528 | 0.989 | 0.35 | 0.323 | 1.372 | 1.02 | 1.102 | 0.764 | 0.323 | 0.247 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_15910
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
3.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
KKRLDLDATKSRWKRA
|
— | — | — | — | — | — |
0.000
|
— | — |
0.266
|
0.324
|
0.026
|
0.528
|
0.100
|
0.360
|
0.413
|
0.032
|
0.119
|
0.069
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000897
|
4.000
|
2.000
|
Hsc_gene_21751.t1;Hsc_gene_21757.t1
|
Hsc_gene_17079.t1;Hsc_gene_17392.t1;Hsc_gene_21751.t1;Hsc_gene_21757.t1;Hsc_gene_23524.t1;Hsc_gene_381.t1;Hsc_gene_416.t1
|
— |
Q5ZIR1.1 Endophilin-B1 [Gallus gallus]
|
EPB70662.1 BAR domain protein [Ancylostoma ceylanicum];RCN52502.1 BAR domain protein [Ancylostoma caninum]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515|GO:0005737
|
GO:0005575_0.906|GO:0110165_0.901|GO:0008150_0.859|GO:0009987_0.833|GO:0005622_0.822|GO:0016020_0.713|GO:0005737_0.692|GO:0065007_0.668|GO:0043226_0.663|GO:0043229_0.647|GO:0071840_0.606|GO:0016043_0.601|GO:0050789_0.597|GO:0051179_0.589|GO:0051234_0.583|GO:0050794_0.579|GO:0003674_0.565|GO:0005488_0.565|GO:0043227_0.556|GO:0043231_0.543|GO:0005515_0.528|GO:0051641_0.510
|
IPR004148+2-238_8-237_16-238+|IPR027267+9-236_17-238+
|
SM00721+2-238+
|
PF03114+8-237+BAR_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-3;43-88
|
2.000
|
4-42;89-238
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.517
|
26499.250
|
9.621
|
5.000
|
34.034
|
4.202
|
56.303
|
43.697
|
18.487
|
15.546
|
44.118
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
1843.683
|
13.863
|
39.860
|
60.737
|
207.671
|
4819.753
|
180.989
|
12968.183
|
17.397
|
1193.919
|
689.695
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.287
|
1.994
|
0.723
|
1.742
|
4.550
|
-4.723
|
1.316
|
-6.016
|
-6.234
|
— | — | — | — |
No JSON data available for plots.