Hg_chrom9_TN10mRNA_16840
Organism: Heterodera glycines Gene Locus: chr9:1926224-1930812 Feature type: polypeptideProtein Sequence
Length: 723
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.804 | 0.901 | 0.905 | 1.049 | 0.899 | 1.383 | 0.445 | 1.521 | 0.953 | 1.906 | 0.713 | 1.546 | 1.46 | 0.904 | 1.242 | 1.245 | 0.59 | 1.132 | 0.851 | 0.285 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_15914
|
— | — |
1.333
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
2.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Not_Clustered
|
0.792
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
endoplasmic_reticulum
|
— |
KKREELRRMVGRRYRD
|
24-47
|
0.929
|
— | — | — | — |
0.000
|
— | — |
0.403
|
0.230
|
0.011
|
0.411
|
0.429
|
0.164
|
0.292
|
0.033
|
0.047
|
0.181
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001448
|
4.000
|
1.000
|
Hsc_gene_430.t1
|
Hsc_gene_429.t1;Hsc_gene_430.t1
|
— |
Q9XX15.1 Ribosomal RNA small subunit methyltransferase nep-1 [Caenorhabditis elegans]
|
KAI1729000.1 EMG1/NEP1 methyltransferase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0070037|GO:0070475
|
GO:0008150_0.865|GO:0005575_0.695|GO:0110165_0.695|GO:0009987_0.692|GO:0016020_0.636|GO:0005622_0.597|GO:0071840_0.548|GO:0043226_0.546|GO:0043229_0.535|GO:0043227_0.524|GO:0043231_0.503
|
IPR005304+533-723_535-717_536-717+|IPR029026+520-723+|IPR029028+521-722+
|
— |
PF03587+535-717+EMG1/NEP1_methyltransferase|PF08700+18-64+Vps51/EXO84/COG1_N-terminal
|
G3DSA:3.40.1280.10:FF:000003+522-723+Ribosomal_RNA_small_subunit_methyltransferase
|
PTHR12636+533-723+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-723
|
5fai_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.683
|
81536.680
|
7.766
|
14.000
|
24.205
|
10.373
|
45.781
|
54.219
|
13.831
|
10.373
|
47.026
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
greenyellow
|
859.970
|
1056.787
|
804.303
|
542.480
|
444.329
|
390.332
|
649.078
|
754.402
|
244.818
|
1838.114
|
1155.273
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.624
|
-1.099
|
-0.459
|
-0.320
|
-0.172
|
0.744
|
0.845
|
— |
-3.023
|
— | — | — | — |
No JSON data available for plots.