Hg_chrom9_TN10mRNA_16842
Organism: Heterodera glycines Gene Locus: chr9:1931002-1935896 Feature type: polypeptideProtein Sequence
Length: 808
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.907 | 0.892 | 0.945 | 0.939 | 0.949 | 1.46 | 0.398 | 1.3 | 0.853 | 1.706 | 0.806 | 1.966 | 1.272 | 0.904 | 1.238 | 1.344 | 0.771 | 0.975 | 0.952 | 0.255 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_15915
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
KKGRK,KKREELRRMVGRRYRD
|
39-62
|
0.929
|
— | — | — | — |
0.000
|
— | — |
0.258
|
0.166
|
0.015
|
0.480
|
0.143
|
0.529
|
0.550
|
0.054
|
0.142
|
0.198
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001448
|
4.000
|
1.000
|
Hsc_gene_430.t1
|
— | — | — |
KAI1711156.1 vps51/Vps67 domain-containing protein [Ditylenchus destructor]
|
No
|
-0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006891|GO:0017119
|
GO:0005575_0.934|GO:0110165_0.926|GO:0016020_0.861|GO:0005622_0.854|GO:0043226_0.805|GO:0043229_0.781|GO:0071944_0.781|GO:0005886_0.771|GO:0043227_0.756|GO:0005737_0.749|GO:0043231_0.733|GO:0005773_0.634|GO:0012505_0.630|GO:0032991_0.629|GO:0008150_0.619|GO:0009987_0.578|GO:0005794_0.561|GO:0017119_0.540|GO:0099023_0.540
|
IPR033370+7-404+
|
— |
PF08700+8-79+Vps51/EXO84/COG1_N-terminal
|
— |
PTHR31658+7-404+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-8
|
1.000
|
9-808
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.696
|
90901.900
|
7.860
|
14.500
|
24.876
|
9.282
|
48.515
|
51.485
|
13.985
|
10.891
|
48.144
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1349.218
|
1960.494
|
1327.459
|
1153.419
|
1010.713
|
1229.342
|
1257.294
|
1300.550
|
496.280
|
2065.891
|
1393.201
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.793
|
-0.902
|
— |
-0.222
|
0.297
|
— | — | — | — | — | — | — | — |
No JSON data available for plots.