Hg_chrom9_TN10mRNA_16843
Organism: Heterodera glycines Gene Locus: chr9:1936068-1937213 Feature type: polypeptideProtein Sequence
Length: 234
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.646 | 1.69 | 1.01 | 0.884 | 0.926 | 1.425 | 0.661 | 0.855 | 1.519 | 1.328 | 1.036 | 1.006 | 2.255 | 0.822 | 0.611 | 0.855 | 0.771 | 1.23 | 0.329 | 0.251 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_15916
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Not_Clustered
|
0.834
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
endoplasmic_reticulum
|
— | — |
1-21
|
0.935
|
— | — | — | — |
0.000
|
— | — |
0.416
|
0.348
|
0.086
|
0.468
|
0.506
|
0.216
|
0.448
|
0.026
|
0.147
|
0.463
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004894
|
2.000
|
1.000
|
Hsc_gene_431.t1
|
Hsc_gene_431.t1
|
— |
Q920J4.3 Thioredoxin-like protein 1 [Rattus norvegicus]
|
KAI1711155.1 PITH domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.912|GO:0110165_0.908|GO:0005622_0.832|GO:0005737_0.828|GO:0003674_0.645|GO:0005829_0.618|GO:0003824_0.522
|
IPR008979+72-211+|IPR010400+65-229_75-224+|IPR037047+68-229+
|
— |
PF06201+75-224+PITH_domain
|
— |
PTHR46115+33-232+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
224-234
|
1.000
|
1-223
|
1wwy_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.641
|
26208.170
|
6.105
|
-1.000
|
22.650
|
11.111
|
46.154
|
53.846
|
11.538
|
11.111
|
49.573
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
yellow
|
817.938
|
619.903
|
407.964
|
462.590
|
557.858
|
465.573
|
389.935
|
471.291
|
1810.641
|
954.829
|
1321.605
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.835
|
-0.559
|
0.291
|
0.238
|
-0.246
|
— | — | — | — | — | — | — | — |
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